View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19051_low_2 (Length: 372)
Name: NF19051_low_2
Description: NF19051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19051_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 11125849 - 11125514
Alignment:
| Q |
1 |
tgtaaggataattcataattgaatggcatataccactatagatgaagcctcttcatcttcttctccttccatccaaacatcaagatggaccaaccatgtt |
100 |
Q |
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| T |
11125849 |
tgtaaggataattcataattgaatggcatataccactatagatgaagcctcttcatcttcttctccttccatccaaacatcaagatggaccaaccatgtt |
11125750 |
T |
|
| Q |
101 |
ttcttgagttttagaggtgaggatactcgccaaggtttcactgaccatctttttgcttcattggaaagaagagggatcaaaacatttaaggatgatcatg |
200 |
Q |
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| T |
11125749 |
ttcttgagttttagaggtgaggacactcgccaaggtttcactgaccatctttttgcttcattggaaagaagagggatcaaaacattcaaggatgatcatg |
11125650 |
T |
|
| Q |
201 |
atcttgagaggggtgaagtgatatcatatgaactcaataaagccattgaagagtctatgtttgctatcatcattctctcaccaaactatgcttcctcaac |
300 |
Q |
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| T |
11125649 |
atcttgagaggggtgaagtgatatcatatgaactcaataaagccattgaagagtctatgtttgctatcatcattctctcaccaaactatgcttcctcaac |
11125550 |
T |
|
| Q |
301 |
atggtgtttggatgagctacaaaagattgttgagtg |
336 |
Q |
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| T |
11125549 |
atggtgtttggatgagctaaaaaagattgttgagtg |
11125514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 6097925 - 6097893
Alignment:
| Q |
283 |
aaactatgcttcctcaacatggtgtttggatga |
315 |
Q |
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| T |
6097925 |
aaactatgcttcctcaaaatggtgtttggatga |
6097893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 29571094 - 29571168
Alignment:
| Q |
249 |
aagagtctatgtttgctatcatcattctctcaccaaactatgcttcctcaacatggtgtttggatgagctacaaa |
323 |
Q |
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| T |
29571094 |
aagattctatgtttgccatcactattctctcaccagactatgcttcttccacttggtgtttggatgagcttcaaa |
29571168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 29821235 - 29821161
Alignment:
| Q |
249 |
aagagtctatgtttgctatcatcattctctcaccaaactatgcttcctcaacatggtgtttggatgagctacaaa |
323 |
Q |
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| T |
29821235 |
aagattctatgtttgccatcactattatctcaccagactatgcatcttccacttggtgtttggatgagcttcaaa |
29821161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 29829901 - 29829835
Alignment:
| Q |
249 |
aagagtctatgtttgctatcatcattctctcaccaaactatgcttcctcaacatggtgtttggatga |
315 |
Q |
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|||| ||||||||||| |||| | ||||||||| ||||||||||||| || |||||||||||||| |
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| T |
29829901 |
aagattctatgtttgccatcactgtcctctcaccagactatgcttcctccacctggtgtttggatga |
29829835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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