View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19051_low_5 (Length: 281)
Name: NF19051_low_5
Description: NF19051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19051_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 2562976 - 2562688
Alignment:
| Q |
9 |
gagatgaaaatggtaatggttataagaataaagatgaagaaatagagannnnnnnataggaggtaaattaccctcaattcatcaaggggtagtgcagaaa |
108 |
Q |
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| T |
2562976 |
gagatgaaaatggtaatggttataagaataaagatgaagaaatagagatttttttatagggggtaaattaccctcaattcatcaaggggtagtgcataaa |
2562877 |
T |
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| Q |
109 |
taaccttcaatattcttttttatattagatgaaatttatgagtcgtcacaccattttaggaagagtcgtgctatcaagtgtcttgaagg----------- |
197 |
Q |
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| T |
2562876 |
taaccttcaatattcttttttatattgaatgaaatttatgagtcgtcacaccattttaggaaaagtcgtgctatcaagtgtcttgaagggagagatttaa |
2562777 |
T |
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| Q |
198 |
----gagaattttatgttta-tatttcaaagaattaactacacacgttctaataaattactagtgactttgattctttaccacgtgtct |
281 |
Q |
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|||||||||||||||| | |||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| || |||||| |
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| T |
2562776 |
aagggagaattttatgtttattctttcaaagaattgactacacaagttctaataaattattagtgactttgattctttaacaagtgtct |
2562688 |
T |
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