View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19051_low_6 (Length: 269)
Name: NF19051_low_6
Description: NF19051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19051_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 12623954 - 12623718
Alignment:
| Q |
18 |
aactcaagtttaaaacacaacttcatcatggttcataataaaaatcttttctccattgtttggtacttataaacagtaagcctgacattttttcataagt |
117 |
Q |
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| T |
12623954 |
aactcaagtttaaaacacaacttcatcatggttcataataaaaatcttttctccattgtttggtacttataaccagtaagcctgacattttttcataagt |
12623855 |
T |
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| Q |
118 |
aaaaagaataacattctgcataagattagcaatacagaatgaagtcgagaacaacgttaagctcttaagaacaaaatcatatacaaaaaaatgttcttnn |
217 |
Q |
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| T |
12623854 |
aaaaagaataacattctgcataagattagcaatacagaatgaagtcgagaacaacgttaagctcttaagaactaaatcatatacaaaaaaatgttcttaa |
12623755 |
T |
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| Q |
218 |
nnnnnnntaaccaagtgaaaaacacaatcctcatgat |
254 |
Q |
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| T |
12623754 |
aaaaaaataaccaagtgaaaaacacaatcctcgtgat |
12623718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 11990990 - 11991040
Alignment:
| Q |
119 |
aaaagaataacattctgcataagattagcaatacagaatgaagtcgagaac |
169 |
Q |
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|||| ||||||||||||||||| ||||||||||||| ||||||| ||||| |
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| T |
11990990 |
aaaacaataacattctgcataaatttagcaatacagattgaagtcaagaac |
11991040 |
T |
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