View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19052_low_4 (Length: 213)
Name: NF19052_low_4
Description: NF19052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19052_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 12143166 - 12143321
Alignment:
| Q |
44 |
gtgaatatgtaagggtccttcccaccatctgctatcttaagcctccacatctctcaccaaacctacctattttcaagctttagttagcaaaaggtagatg |
143 |
Q |
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| T |
12143166 |
gtgaatatgtaagggtccttcccaccatctgctatcttaagcctccacatctctcaccaaacctacctattttcaagctttagttagcaaaaggtagatg |
12143265 |
T |
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| Q |
144 |
attatgaattctcacttgccattgctcgtacttatacgattgtcaaactaatttct |
199 |
Q |
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| T |
12143266 |
attatgaattctcacttgccattgctcgtacttatacgattgtcaaactaatttct |
12143321 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 5681013 - 5681063
Alignment:
| Q |
45 |
tgaatatgtaagggtccttcccaccatctgctatcttaagcctccacatct |
95 |
Q |
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| T |
5681013 |
tgaatatgtatggatccttcccaccatctgctatcttcagcctccacatct |
5681063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 5701066 - 5701116
Alignment:
| Q |
45 |
tgaatatgtaagggtccttcccaccatctgctatcttaagcctccacatct |
95 |
Q |
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| T |
5701066 |
tgaatatgtatggatcattccccccatctgctatcttcagcctccacatct |
5701116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 13041265 - 13041215
Alignment:
| Q |
45 |
tgaatatgtaagggtccttcccaccatctgctatcttaagcctccacatct |
95 |
Q |
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|||||||||| ||||| || ||||||||||||||||| | ||||||||||| |
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| T |
13041265 |
tgaatatgtatgggtcattaccaccatctgctatcttcaacctccacatct |
13041215 |
T |
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