View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19053_high_3 (Length: 448)
Name: NF19053_high_3
Description: NF19053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19053_high_3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 49936594 - 49936164
Alignment:
| Q |
18 |
tttaggacttcagaatttgacatcagacaccgtattcctatcatattatatacggtttccgattttatattaattctttctctctcttcagaatctgaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49936594 |
tttaggacttcagaatttgacatcagacaccgtattcctatcatattatatacggtttccgattttatatgaattctttctctctcttcagaatctgaac |
49936495 |
T |
|
| Q |
118 |
acgctgaaactgagtgtattttatacggtgtcgaaattgtgtccaaatataagtgtggtttatttatcactcgaggttgtgataagtccaggaatctcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49936494 |
acgctgaaactgagtgtattttatacggtgtcgaaattgtgtccaaatataagtgtggtttatttatcactcgaggttgtgataagtccaggaatctcat |
49936395 |
T |
|
| Q |
218 |
tcttttcataattgaatcattgaaatgactctttaatcttgnnnnnnnntatgggtgcttgtttgattatcctggttttcactcttcattgacgtctact |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49936394 |
tcttttcataattgaatcattgaaatgactctttaatcttgaaaaaaaatatgggtgcttgtttgattatcctggttttcactcttcattgacgtctact |
49936295 |
T |
|
| Q |
318 |
gtactgaaccgtaacattgttatagtaatcacaagttcacaacagttcattgacttccattccattatatgaaatcaatgtttggccatagtaatgacat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49936294 |
gtactgaaccgtaacattgttatagtaatcacaagttcacaacagttcattgacttccattccattatatgaaatcaatgtttggccatagtaatgacat |
49936195 |
T |
|
| Q |
418 |
cggcttttgtatattatactgaatgtctgtt |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49936194 |
cggcttttgtatattatactgaatgtctgtt |
49936164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 167
Target Start/End: Original strand, 32552535 - 32552671
Alignment:
| Q |
30 |
gaatttgacatcagacaccgtattcctatcatattatatacggtttccgattttatattaattctttctctctcttcagaatctgaacacgctgaaactg |
129 |
Q |
| |
|
|||||||||| ||||||||||||||| | || ||| ||||| |||| ||||||||||||||| ||||| |||| ||| || ||||| || ||| || |
|
|
| T |
32552535 |
gaatttgacaccagacaccgtattccgaacacattctatacaatttctgattttatattaatt-tttctttctcatcaagattcaaacacactaaaagtg |
32552633 |
T |
|
| Q |
130 |
agtgtattttatacggtgtcgaaattgtgtccaaatat |
167 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
32552634 |
agtgtattttatacggtgtcaaaatcgtgtccaaatat |
32552671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 5231954 - 5231836
Alignment:
| Q |
29 |
agaatttgacatcagacaccgtattcctatcatattatatacggtttccgattttatattaattctttctctctcttcagaatctgaacacgctgaaact |
128 |
Q |
| |
|
|||| ||||||||||||| ||||||| | | |||| |||| ||||| |||| |||||||||| ||||||||| | |||||| ||| | || ||| | |
|
|
| T |
5231954 |
agaagttgacatcagacaacgtattctgaccttattcgatacagtttctgattctatattaattttttctctcttctaagaatccgaatgcactaaaa-t |
5231856 |
T |
|
| Q |
129 |
gagtgtattttatacggtgt |
148 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5231855 |
gagtgtattttatacggtgt |
5231836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 42583905 - 42584025
Alignment:
| Q |
27 |
tcagaatttgacatcagacaccgtattcctatcatattatatacggtttccgattttatattaattctttctctctcttcagaatctgaacacgctgaaa |
126 |
Q |
| |
|
||||||||||||| |||||||||||||| | || ||| |||||| || ||| |||||| ||||| ||| |||||| | ||||| ||||| |||||| |
|
|
| T |
42583905 |
tcagaatttgacaccagacaccgtattctgagcacattctatacgactttcga-tttatagtaattattt-tctctcattggaatccgaacatactgaaa |
42584002 |
T |
|
| Q |
127 |
ctgagtgtattttatacggtgtc |
149 |
Q |
| |
|
||| |||||||||||| |||||| |
|
|
| T |
42584003 |
ctgggtgtattttatatggtgtc |
42584025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University