View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19053_high_5 (Length: 427)
Name: NF19053_high_5
Description: NF19053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19053_high_5 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Complemental strand, 5378723 - 5378313
Alignment:
| Q |
8 |
catcatcagataaacatcagtatagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaa |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5378723 |
catcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaa |
5378624 |
T |
|
| Q |
108 |
ttcaagatacaaaactaatcgtgacaagcacagaagacaacaaatctttaaaattggagatttggtatggatacatttgcgcaaagaacgatttcccaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5378623 |
ttcaagatacaaaactaatcgtgacaagcacagaagacaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcctaaa |
5378524 |
T |
|
| Q |
208 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggatcctatg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5378523 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatg |
5378424 |
T |
|
| Q |
308 |
gtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaacaagatataaactcgaggacgagttctgttcaacctggggaggatga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||| |||| |
|
|
| T |
5378423 |
gtgtctcagcaaccttcaatgttgccgacctttcaccatatctggatgatgaactagatataaactcgaggacgagttctactcaaccgggggagaatga |
5378324 |
T |
|
| Q |
408 |
tgcagatcaag |
418 |
Q |
| |
|
||||||||||| |
|
|
| T |
5378323 |
tgcagatcaag |
5378313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 53 - 413
Target Start/End: Complemental strand, 13719805 - 13719445
Alignment:
| Q |
53 |
caaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaattcaagatacaaaactaatcgtgacaagcacagaagacaacaaat |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13719805 |
caaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaat |
13719706 |
T |
|
| Q |
153 |
ctttaaaattggagatttggtatggatacatttgcgcaaagaacgatttcccaaacaaccaaatgccaagttgtcaccaagagctgatggtcccttcaaa |
252 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13719705 |
ctttaaagttggagatttggtatggatacatttgcgcaaaaaacgatttcccaaacaaccaaatgccaagttgtcaccaagagctgacggtcccttcaaa |
13719606 |
T |
|
| Q |
253 |
atagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggatcctatggtgtctcagcaaccttcaatgttgccgatctttcaccatatctgg |
352 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13719605 |
atagttaaaaaaatcaatgacaatgcttacaaggtagaatttccaggaacctatggtgtctcagcaaccttcaatgttgtcgatctttcaccatatctgg |
13719506 |
T |
|
| Q |
353 |
atgacgaacaagatataaactcgaggacgagttctgttcaacctggggaggatgatgcaga |
413 |
Q |
| |
|
||||||||| |||||| ||||||||| | |||||||||||||| || ||||| ||| |||| |
|
|
| T |
13719505 |
atgacgaaccagatatgaactcgagggcaagttctgttcaacccggagaggaagatacaga |
13719445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Complemental strand, 16773161 - 16772756
Alignment:
| Q |
8 |
catcatcagataaacatcagtatagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaa |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16773161 |
catcatcagataaacatcagtttagtgcagatgcagaaagtagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaa |
16773062 |
T |
|
| Q |
108 |
ttcaagatacaaaactaatcgtgacaagcacagaagacaacaaatctttaaaattggagatttggtatggatacatttgcgcaaagaacgatttcccaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16773061 |
ttcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaa |
16772962 |
T |
|
| Q |
208 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggatcctatg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16772961 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatg |
16772862 |
T |
|
| Q |
308 |
gtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaacaagatataaactcgaggacgagttctgttcaacctggggaggatga |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16772861 |
gtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgatgaaccagatatgaactcgagggcgagttctgttcaacctggggaggatga |
16772762 |
T |
|
| Q |
408 |
tgcaga |
413 |
Q |
| |
|
| |||| |
|
|
| T |
16772761 |
tacaga |
16772756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 101 - 413
Target Start/End: Original strand, 32707702 - 32708014
Alignment:
| Q |
101 |
agcaaaattcaagatacaaaactaatcgtgacaagcacagaagacaacaaatctttaaaattggagatttggtatggatacatttgcgcaaagaacgatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32707702 |
agcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatt |
32707801 |
T |
|
| Q |
201 |
tcccaaacaaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32707802 |
tcccaaacaaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccagga |
32707901 |
T |
|
| Q |
301 |
tcctatggtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaacaagatataaactcgaggacgagttctgttcaacctgggg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
32707902 |
acctatggtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctgttcaacccgggg |
32708001 |
T |
|
| Q |
401 |
aggatgatgcaga |
413 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
32708002 |
aggatgatacaga |
32708014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 8 - 327
Target Start/End: Original strand, 26243192 - 26243511
Alignment:
| Q |
8 |
catcatcagataaacatcagtatagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaa |
107 |
Q |
| |
|
|||||||| |||||||| ||| ||||||| ||||||| | | ||||||||| |||| ||||| ||| |||||||| | | ||||||||||| ||||| |
|
|
| T |
26243192 |
catcatcacataaacattagtttagtgcatatgcagacaatatagcaaaagaaatcagtaaacttcataaacaggtttaagagcggataattaaacaaaa |
26243291 |
T |
|
| Q |
108 |
ttcaagatacaaaactaatcgtgacaagcacagaagacaacaaatctttaaaattggagatttggtatggatacatttgcgcaaagaacgatttcccaaa |
207 |
Q |
| |
|
|| |||||||| |||||||| |||| | ||| || ||| ||||||||||| |||||||||||||| || ||||| | | ||||||||||||| ||| |
|
|
| T |
26243292 |
ctctagatacaagactaatcgagacatgtacaaaaatcaataaatctttaaagttggagatttggtacgggtacatattctcaaagaacgattttgaaaa |
26243391 |
T |
|
| Q |
208 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggatcctatg |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||| ||||| |||||| ||| |||||||| ||||||||||| ||||||||| | || || |||||| |
|
|
| T |
26243392 |
caaccaaatgtcaagttgtcaccaagagcttatggcccctttaaaataattcggaaaatcaatgacaatgcttataaggtagaactttcaagaacctatg |
26243491 |
T |
|
| Q |
308 |
gtgtctcagcaaccttcaat |
327 |
Q |
| |
|
|||| | | ||||||||||| |
|
|
| T |
26243492 |
gtgtttgaacaaccttcaat |
26243511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 32707638 - 32707701
Alignment:
| Q |
8 |
catcatcagataaacatcagtatagtgcagatgcagaaagcagagcaaaagagatcaagaaact |
71 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32707638 |
catcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaact |
32707701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Original strand, 91184 - 91589
Alignment:
| Q |
8 |
catcatcagataaacatcagtatagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaa |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
91184 |
catcatcagataaacatcagtttagtgcagatgcagaaagtagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaa |
91283 |
T |
|
| Q |
108 |
ttcaagatacaaaactaatcgtgacaagcacagaagacaacaaatctttaaaattggagatttggtatggatacatttgcgcaaagaacgatttcccaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91284 |
ttcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaa |
91383 |
T |
|
| Q |
208 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggatcctatg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
91384 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatg |
91483 |
T |
|
| Q |
308 |
gtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaacaagatataaactcgaggacgagttctgttcaacctggggaggatga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
91484 |
gtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctgttcaatccggggaggatga |
91583 |
T |
|
| Q |
408 |
tgcaga |
413 |
Q |
| |
|
| |||| |
|
|
| T |
91584 |
tacaga |
91589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 4879039 - 4879083
Alignment:
| Q |
303 |
ctatggtgtctcagcaaccttcaatgttgccgatctttcaccata |
347 |
Q |
| |
|
|||||||||||| || || ||||||||||| |||||||||||||| |
|
|
| T |
4879039 |
ctatggtgtctctgctactttcaatgttgctgatctttcaccata |
4879083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Complemental strand, 24906 - 24501
Alignment:
| Q |
8 |
catcatcagataaacatcagtatagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaa |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
24906 |
catcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaacttcatgaacaggttcgacaacggataatcaagcaaaa |
24807 |
T |
|
| Q |
108 |
ttcaagatacaaaactaatcgtgacaagcacagaagacaacaaatctttaaaattggagatttggtatggatacatttgcgcaaagaacgatttcccaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24806 |
ttcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgctcaaagaacgatttcccaaa |
24707 |
T |
|
| Q |
208 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggatcctatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
24706 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaatttccaggaacctatg |
24607 |
T |
|
| Q |
308 |
gtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaacaagatataaactcgaggacgagttctgttcaacctggggaggatga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
24606 |
gtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctgttcaacccagggaggatga |
24507 |
T |
|
| Q |
408 |
tgcaga |
413 |
Q |
| |
|
| |||| |
|
|
| T |
24506 |
tacaga |
24501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 408
Target Start/End: Complemental strand, 2791270 - 2790870
Alignment:
| Q |
8 |
catcatcagataaacatcagtatagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaa |
107 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
2791270 |
catcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacatgttcgacaacggataatcaagcaaaa |
2791171 |
T |
|
| Q |
108 |
ttcaagatacaaaactaatcgtgacaagcacagaagacaacaaatctttaaaattggagatttggtatggatacatttgcgcaaagaacgatttcccaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2791170 |
ttcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttacgcaaagaacgatttcccaaa |
2791071 |
T |
|
| Q |
208 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggatcctatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2791070 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaatgacaatgcttacaaggtagaattgccaggaacctatg |
2790971 |
T |
|
| Q |
308 |
gtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaacaagatataaactcgaggacgagttctgttcaacctggggaggatga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| || |||||||| |
|
|
| T |
2790970 |
gtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctgttcaacccggagaggatga |
2790871 |
T |
|
| Q |
408 |
t |
408 |
Q |
| |
|
| |
|
|
| T |
2790870 |
t |
2790870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 418
Target Start/End: Complemental strand, 14472252 - 14471842
Alignment:
| Q |
8 |
catcatcagataaacatcagtatagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaa |
107 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
14472252 |
catcaacagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggtttgacaacggataatcaagcaaaa |
14472153 |
T |
|
| Q |
108 |
ttcaagatacaaaactaatcgtgacaagcacagaagacaacaaatctttaaaattggagatttggtatggatacatttgcgcaaagaacgatttcccaaa |
207 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||| |
|
|
| T |
14472152 |
tttaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaacgttggagatttggtatgggtacattttcgcaaagaacgatttcctaaa |
14472053 |
T |
|
| Q |
208 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggatcctatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14472052 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaagatagtacagaaaatcaatgacaatgcttacaaggtagaattgccaggaacctatg |
14471953 |
T |
|
| Q |
308 |
gtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaacaagatataaactcgaggacgagttctgttcaacctggggaggatga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||| |||| |
|
|
| T |
14471952 |
gtgtctcagcaaccttcaatgttgccgaccttacaccatatctggatgatgaactagatataaactcgaggacgagttctactcaacccggggagaatga |
14471853 |
T |
|
| Q |
408 |
tgcagatcaag |
418 |
Q |
| |
|
||||||||||| |
|
|
| T |
14471852 |
tgcagatcaag |
14471842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 4669257 - 4669068
Alignment:
| Q |
229 |
ccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggat-cctatggtgtctcagcaaccttcaat |
327 |
Q |
| |
|
||||||| |||||| |||||||||||||| || ||||||| ||||||||||||||| | || || | | || |||||| |||||||||| |||||||| |
|
|
| T |
4669257 |
ccaagagttgatgggcccttcaaaatagtgcagaaaatcattaacaatgcttacaaggcataaatgtc-gaatacctatgatgtctcagcagccttcaat |
4669159 |
T |
|
| Q |
328 |
gttgccgatctttcaccatatctggatgacgaacaagatataaactcgaggacgagttctgttcaacctggggaggatgatgcagatcaag |
418 |
Q |
| |
|
|||| |||| ||||| ||||| |||||| |||| |||| || | |||||| ||||||| ||||| | || ||||||||| || |||||| |
|
|
| T |
4669158 |
gttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttctattcaaaccggagaggatgatacatatcaag |
4669068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 348
Target Start/End: Complemental strand, 49169386 - 49169266
Alignment:
| Q |
231 |
aagagctgatggtcccttcaaaa---tagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggatcctatggtgtctcagcaaccttcaat |
327 |
Q |
| |
|
||||| ||||||||||||||| | |||| || |||||||| || ||| |||||||||| ||| |||||| | |||||||||||||||| |||| |
|
|
| T |
49169386 |
aagagttgatggtcccttcaataatatagtgcataaaatcaatgaaaatccttacaaggttgaactgccagaaatctatggtgtctcagcatgtaacaat |
49169287 |
T |
|
| Q |
328 |
gttgccgatctttcaccatat |
348 |
Q |
| |
|
|||||| ||||||| |||||| |
|
|
| T |
49169286 |
gttgccaatctttcgccatat |
49169266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 2404322 - 2404278
Alignment:
| Q |
303 |
ctatggtgtctcagcaaccttcaatgttgccgatctttcaccata |
347 |
Q |
| |
|
|||||| ||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
2404322 |
ctatggagtctctgctaccttcaatgttgctgatctttcaccata |
2404278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Original strand, 11715987 - 11716392
Alignment:
| Q |
8 |
catcatcagataaacatcagtatagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaa |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
11715987 |
catcatcagataaacatcagtttagtgcagatgcagaaagtagagcaaatgagatcaagaaactgcatgaacaggtttgacaacggataatcaagcaaaa |
11716086 |
T |
|
| Q |
108 |
ttcaagatacaaaactaatcgtgacaagcacagaagacaacaaatctttaaaattggagatttggtatggatacatttgcgcaaagaacgatttcccaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11716087 |
ttcaagatacaaaactaatcgtgacaagcacataaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgattttccaaa |
11716186 |
T |
|
| Q |
208 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggatcctatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
11716187 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaatgacaatgcttacaaggtagaattgctaggaacctatg |
11716286 |
T |
|
| Q |
308 |
gtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaacaagatataaactcgaggacgagttctgttcaacctggggaggatga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
11716287 |
gtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctgttcaacccagggaggatga |
11716386 |
T |
|
| Q |
408 |
tgcaga |
413 |
Q |
| |
|
| |||| |
|
|
| T |
11716387 |
tacaga |
11716392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 418
Target Start/End: Original strand, 13166402 - 13166814
Alignment:
| Q |
8 |
catcatcagataaacatcagtatagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaa |
107 |
Q |
| |
|
|||||| |||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
13166402 |
catcattagataaacatcagtttagtgcaaatgcagaaagtagagcaaaagagatcaagaaactgcatgaacaggttcgacaacagacaaataagcaaaa |
13166501 |
T |
|
| Q |
108 |
ttcaagatacaaaactaatcgtgacaagcacagaagacaacaaatctttaaaattggagatttggtatggatacatttgcgcaaagaacgatttcccaaa |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13166502 |
ttcatgatacaaaactaatcgtgacaagcacaaaagacaaaaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaa |
13166601 |
T |
|
| Q |
208 |
caaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggatcc--ta |
305 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| || || || || |
|
|
| T |
13166602 |
caaccaaatggcaagttgtcaccaagagctgatggtcccttcataatagtacaaaaaatcaatgacaatgcttacaaggtagaattttcaagaacctata |
13166701 |
T |
|
| Q |
306 |
tggtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaacaagatataaactcgaggacgagttctgttcaacctggggaggat |
405 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||| ||| ||||| |
|
|
| T |
13166702 |
tggtgtcttagcaaccttcaatgtttccaatctttcaccatatctggatgacgaaccagatataaactcgagggcaagttctgttcaacccgggaaggat |
13166801 |
T |
|
| Q |
406 |
gatgcagatcaag |
418 |
Q |
| |
|
||| |||| |||| |
|
|
| T |
13166802 |
gatacagagcaag |
13166814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 25481466 - 25481376
Alignment:
| Q |
8 |
catcatcagataaacatcagtatagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaa |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
25481466 |
catcatcagataaacattcgtatagtgcagatgcagaaa---------aagagatcaagaaactgcatgaacatgttcgaaaactgataattaagcaaaa |
25481376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 25499925 - 25499842
Alignment:
| Q |
9 |
atcatcagataaacatcagtatagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaa |
101 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
25499925 |
atcatcagataaacattagtatggtgcagatgcagaaa---------aagagataaagaaactgcatgaacatgttcgaaaactgataattaa |
25499842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 3934643 - 3934687
Alignment:
| Q |
303 |
ctatggtgtctcagcaaccttcaatgttgccgatctttcaccata |
347 |
Q |
| |
|
|||||||||||| || || ||||||||||| |||||||||||||| |
|
|
| T |
3934643 |
ctatggtgtctctgctactttcaatgttgctgatctttcaccata |
3934687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Original strand, 14026410 - 14026816
Alignment:
| Q |
8 |
catcatcagataaacatcagtatagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaa |
107 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14026410 |
catcatcagataaacatcagtttagtgcagatgcagaaagcagggcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaa |
14026509 |
T |
|
| Q |
108 |
ttcaagatacaaaactaatcgtgacaagcacagaagacaacaaatctttaaaattggagatttggtatggatacatttgcgcaaagaacgatttcccaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14026510 |
ttcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaa |
14026609 |
T |
|
| Q |
208 |
caaccaaatg-ccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggatcctat |
306 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
14026610 |
caaccaaatgcccaagttgtccccaagagctgatggtcccctcaaaatagttcaaaaaatcaatgacaatgcttacaaggtagaatttccaggaacctat |
14026709 |
T |
|
| Q |
307 |
ggtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaacaagatataaactcgaggacgagttctgttcaacctggggaggatg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||| |||||| ||||||||| |||||||||| |
|
|
| T |
14026710 |
ggtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaaccatatatgaactcgagggcgagttttgttcaacccggggaggatg |
14026809 |
T |
|
| Q |
407 |
atgcaga |
413 |
Q |
| |
|
|| |||| |
|
|
| T |
14026810 |
atacaga |
14026816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 347
Target Start/End: Original strand, 45166620 - 45166804
Alignment:
| Q |
163 |
ggagatttggtatggatacatttgcgcaaagaacgatttcccaaacaaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaa |
262 |
Q |
| |
|
||||| ||||||||||| || | ||| || ||||||||||| || |||||||||||||||| || ||||||||||||||||| || | | | || | |
|
|
| T |
45166620 |
ggagacttggtatggatccactagcgaaaggaacgatttcctaacaaaccaaatgccaagttatctccaagagctgatggtccttttagagttacgcaga |
45166719 |
T |
|
| Q |
263 |
aaatcaacgacaatgcttacaaggtagaattgccaggatcctatggtgtctcagcaaccttcaatgttgccgatctttcaccata |
347 |
Q |
| |
|
||||||| || ||||| ||||| |||| | ||||| |||||| ||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
45166720 |
aaatcaatgataatgcctacaaaatagagctaccaggtgactatggagtctctgctaccttcaatgttgctgatctttcaccata |
45166804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 42468904 - 42468860
Alignment:
| Q |
303 |
ctatggtgtctcagcaaccttcaatgttgccgatctttcaccata |
347 |
Q |
| |
|
|||||||||||| || || ||||||||||| |||||||||||||| |
|
|
| T |
42468904 |
ctatggtgtctctgctactttcaatgttgctgatctttcaccata |
42468860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 101 - 413
Target Start/End: Original strand, 12842424 - 12842736
Alignment:
| Q |
101 |
agcaaaattcaagatacaaaactaatcgtgacaagcacagaagacaacaaatctttaaaattggagatttggtatggatacatttgcgcaaagaacgatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12842424 |
agcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatt |
12842523 |
T |
|
| Q |
201 |
tcccaaacaaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12842524 |
tcccaaacaaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccagga |
12842623 |
T |
|
| Q |
301 |
tcctatggtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaacaagatataaactcgaggacgagttctgttcaacctgggg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
12842624 |
acctatggtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctgttcaacccgggg |
12842723 |
T |
|
| Q |
401 |
aggatgatgcaga |
413 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
12842724 |
aggatgatacaga |
12842736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 12842360 - 12842423
Alignment:
| Q |
8 |
catcatcagataaacatcagtatagtgcagatgcagaaagcagagcaaaagagatcaagaaact |
71 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12842360 |
catcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaact |
12842423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University