View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19053_high_7 (Length: 338)
Name: NF19053_high_7
Description: NF19053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19053_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 43823109 - 43823410
Alignment:
| Q |
20 |
aataaagtaccttccaatgatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctccagcccagataggatatatgcagatattaa |
119 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43823109 |
aataaagtaccttccagtgatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctccagcccagataggatatatgcagatattaa |
43823208 |
T |
|
| Q |
120 |
ctcccaaagatacagcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgtagca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43823209 |
ctcccaaagatacagcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgtagca |
43823308 |
T |
|
| Q |
220 |
ataagtaatcaagaacacacggaacccatattcataaggcttcaaagttgggtacaattttgcataggtaatacaaaatccaacaatgaatgtactgata |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43823309 |
ataagtaatcaagaacacacggaacccatattcataaggcttcaaagttgggtacaattttgcataggtaatacaaaatccaacaatgaatgtactgata |
43823408 |
T |
|
| Q |
320 |
at |
321 |
Q |
| |
|
|| |
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|
| T |
43823409 |
at |
43823410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 43816142 - 43816444
Alignment:
| Q |
16 |
atgtaataaagtaccttccaatgatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctccagcccagataggatatatgcagata |
115 |
Q |
| |
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|||| ||||| |||||||||| || |||||||||||| |||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
43816142 |
atgttataaaataccttccaaagacgttgcaacacccatgaaattttttaccacaagattatgcagatcctcgccagcccagataggatatatgcagata |
43816241 |
T |
|
| Q |
116 |
ttaactcccaaagatacagcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgt |
215 |
Q |
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|
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
43816242 |
ttgactcccaaagacacagcagcaccaagcgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccagtatgataaccagataccgtaatgt |
43816341 |
T |
|
| Q |
216 |
agcaataagtaatcaagaacacacggaacccatattcataaggcttcaaagttgggtacaattttgcataggtaatacaaaatccaacaatgaatgtact |
315 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
43816342 |
agcaataagtgatcaagaacacacggaacccatattcataaggcttcaaagttgggtataattttgcataggtagcgcaaaatccaacaatgaatgtact |
43816441 |
T |
|
| Q |
316 |
gat |
318 |
Q |
| |
|
||| |
|
|
| T |
43816442 |
gat |
43816444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 38 - 321
Target Start/End: Original strand, 43830387 - 43830670
Alignment:
| Q |
38 |
gatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctccagcccagataggatatatgcagatattaactcccaaagatacagcag |
137 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| |||||||| |||||| ||||| ||||| |||||||||||||||||||| ||||||||||| ||||||| |
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| T |
43830387 |
gatgttgcaacgcccatgaaattttttatcacaagattatacaaatcttctccggcccaaataggatatatgcagatattgactcccaaagagacagcag |
43830486 |
T |
|
| Q |
138 |
caccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgtagcaataagtaatcaagaacac |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43830487 |
caccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaactcaccagtatgataaccagatactgtaatgtagcaataagtgatcaagaacac |
43830586 |
T |
|
| Q |
238 |
acggaacccatattcataaggcttcaaagttgggtacaattttgcataggtaatacaaaatccaacaatgaatgtactgataat |
321 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| || | ||||||||| ||| ||| |||||||||||||||||| ||||||| |
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| T |
43830587 |
acggaaaccatattcataaggctttaaagttggatagagttttgcataagtagcacagaatccaacaatgaatgtagtgataat |
43830670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 4999146 - 4999249
Alignment:
| Q |
212 |
atgtagcaataagtaatcaagaacacacggaacccatattcataaggcttcaaagttgggtacaattttgcataggtaatacaaaatccaacaatgaatg |
311 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||||||| |||||||||| ||||| | ||||||||| ||| ||| |||||||||||||||| |
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|
| T |
4999146 |
atgtagcaataagtgatcaagaacacacggaaacgatattcataacgcttcaaagtagggtagagttttgcataagtagcacagaatccaacaatgaatg |
4999245 |
T |
|
| Q |
312 |
tact |
315 |
Q |
| |
|
|||| |
|
|
| T |
4999246 |
tact |
4999249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 285
Target Start/End: Complemental strand, 31807734 - 31807477
Alignment:
| Q |
28 |
accttccaatgatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctccagcccagataggatatatgcagatattaactcccaaa |
127 |
Q |
| |
|
|||||| ||||||||||| || || ||||||||||| | ||||| ||| | ||| || || ||||| || ||||||||||| | ||| || || | | |
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|
| T |
31807734 |
accttctaatgatgttgctacgcctgtgaaatttttcgcgacaagataatgtagatcttcaccggcccatattggatatatgcacacatttacgccaaca |
31807635 |
T |
|
| Q |
128 |
gatacagcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgtagcaataagtaa |
227 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || | | ||||| |||||| || || | |||| |||||||| ||| ||| ||||| || | |
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| T |
31807634 |
gatacagcagcaccaagagcaatgagcaaaaatctgtttgttgctgtatgaagaaagtctccggttcgatatccagatacaataacgtaacaataggtga |
31807535 |
T |
|
| Q |
228 |
tcaagaacacacggaacccatattcataaggcttcaaagttgggtacaattttgcata |
285 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| ||||| || | ||||||||| |
|
|
| T |
31807534 |
tcaagaacacacggaatccatattcataagccttcattgttggatatagttttgcata |
31807477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 34803955 - 34804058
Alignment:
| Q |
212 |
atgtagcaataagtaatcaagaacacacggaacccatattcataaggcttcaaagttgggtacaattttgcataggtaatacaaaatccaacaatgaatg |
311 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||| ||| ||||||||||| ||||| | ||||||||| ||| ||| |||||||||||||||| |
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|
| T |
34803955 |
atgtagcaataagtgatcaagaacacacggaaaccatattgatatggcttcaaagtagggtagagttttgcataagtagcacagaatccaacaatgaatg |
34804054 |
T |
|
| Q |
312 |
tact |
315 |
Q |
| |
|
|||| |
|
|
| T |
34804055 |
tact |
34804058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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