View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19053_high_8 (Length: 300)

Name: NF19053_high_8
Description: NF19053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19053_high_8
NF19053_high_8
[»] chr5 (1 HSPs)
chr5 (15-300)||(7831861-7832146)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 7831861 - 7832146
Alignment:
Q  15 tattagtagcaacaacacctacttggtcctaaatggccctcgtctccata----aaaaatgaattctttgtggccatcttaagaagaattaaatagtatt 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7831861 tattagtagtaacaacacctacttggtcctaaatggccctcgtctctatataaaaaaaatgaattctttgtggccatcttaagaagaattaaatagtatt 7831960  T
Q  111 tattctttaaaccacaaacaaaattcacaaacatcgattgggatcaatcactgatgaaggcaaaccaatttgaagacttacacaaacaccatagaattta 210  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7831961 tattctttaaaccacaaacaaaattcacaaacatcg----ggatcaatcactgatgaaggcaaaccaatttgaagacttacacaaacaccatagaattta 7832056  T
Q  211 ggtgtaattgagaaggtgcaatgttcaaccatccaaagacgcgattttaaaaaaggagagaaatatggcatcagagaccaatctttttga 300  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7832057 ggtgtaattgagaaggtgcaatgctcaaccatccaaagacgcgattttaaaaaaggagagaaatatggcatcagagaccaatctttttga 7832146  T

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