View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19053_low_13 (Length: 277)
Name: NF19053_low_13
Description: NF19053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19053_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 25740106 - 25740357
Alignment:
| Q |
9 |
gaagaatatgaaagtagtaaatccataaaacagaatgtatcagcaatgatcttttaggatgaacactgcatgctttaaaggaagaaataaaactcatgga |
108 |
Q |
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| T |
25740106 |
gaagaatatgaaagtagtaaatccataaaacagaatgtatcagcaatgatcttttaggatgaacactgcatgctttaaaggaagaaataaaaatcataga |
25740205 |
T |
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| Q |
109 |
ctaagaaatatagagtattaaagagaatggaaaagaaaatagaaataaaagggtagatctgcaacatgaatgcatcttccaaccaattcattgtagacag |
208 |
Q |
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| T |
25740206 |
ctaagaaatatagagtattaaagagaatggaaaagaaaatagaaataaaagggtagatctgcaacatgaatgcatcttccaaccaattcattgtagacag |
25740305 |
T |
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| Q |
209 |
cattggcatatnnnnnnncatattaaagtatcacgacagtggaattaccata |
260 |
Q |
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| T |
25740306 |
cattggcatacaaaaaaacatattaaagtgtcacgacagtggaattaccata |
25740357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 25732431 - 25732611
Alignment:
| Q |
9 |
gaagaatatgaaagtagtaaatccataaaacagaatgtatcagcaatgatctt--ttaggatgaacactgcatgctttaaaggaagaaataaaactcatg |
106 |
Q |
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| T |
25732431 |
gaagaatatgaaagtagtaaatccaagagacagaatgtattagcaatgcttttgtttaggatgaacactgcattatttaaaggaagaaataaaaatcatg |
25732530 |
T |
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| Q |
107 |
gactaagaaatatagagtattaaagagaatggaaaagaaaatagaaataaaagggtagatctgcaacatgaatgcatcttccaaccaa |
194 |
Q |
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| T |
25732531 |
tactaagaaatatagagtattaaagtgaatggaaa-------acaaataaaaagtttgatccgcaacatgaatgcatcttacaaccaa |
25732611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 25762859 - 25762957
Alignment:
| Q |
61 |
tttaggatgaacactgcatgctttaaaggaagaaataaaactcatggactaagaaatatagagtattaaagagaatggaaaagaaaatagaaataaaag |
159 |
Q |
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|||||||| | ||||||||||||||||| ||||||||||| |||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||| |
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| T |
25762859 |
tttaggatcaccactgcatgctttaaagaaagaaataaaaatcatggtctaagaaatatagatccttaacgagaatggaaaagaaaaaagaaataaaag |
25762957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 25754958 - 25755034
Alignment:
| Q |
126 |
ttaaagagaatggaaaagaaaatagaaataaaagggtagatctgcaacatga--atgcatcttccaaccaattcatt |
200 |
Q |
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| T |
25754958 |
ttaaagagaatggaaaagtaaaaagaaataaaagggtttatccaaaacatgaatatgcatcttccaaccaattcatt |
25755034 |
T |
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