View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19053_low_18 (Length: 235)
Name: NF19053_low_18
Description: NF19053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19053_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4264067 - 4263847
Alignment:
| Q |
1 |
aagtaatatattaccataaaggaaaaacttaccaacatcaactaacaattagttacttatgaaatataataaataatgatgaattaggtgaggtgcaaaa |
100 |
Q |
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| T |
4264067 |
aagtaatatattaccataaaggaaaaacttaccaacatcaactaacaattagttacttatgaaatataataaataatgatgaattaggtgaggtgcaaaa |
4263968 |
T |
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| Q |
101 |
taccagaattgtgtgatgagaatggagcatatgtcgtggtgacagattttggcgtgggagacaggacagacttcatcatgagcccacgtggctattcaaa |
200 |
Q |
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| T |
4263967 |
taccagaattgtgtgatgagaatggagcatatgtcgtggtgaccgattttggcgtgggagacaggacagactttatcatgagcccacgtggctattcaaa |
4263868 |
T |
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| Q |
201 |
attgggcaaaaatggtgatgc |
221 |
Q |
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| T |
4263867 |
attgggcaaaaatggtgatgc |
4263847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 41244712 - 41244821
Alignment:
| Q |
79 |
atgaattaggtgaggtgcaaaataccagaattgtgtgatgagaatggagcatatgtcgtggtgacagattttggcgtgggagacaggacagacttcatca |
178 |
Q |
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| T |
41244712 |
atgaattaggtgagatgcaaaataccacaatattgtgatgacaatggagcattggtggtggtaaccgactatggtgagggagatagaactgacttcataa |
41244811 |
T |
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| Q |
179 |
tgagcccacg |
188 |
Q |
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| T |
41244812 |
tgagtccacg |
41244821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 41232892 - 41233009
Alignment:
| Q |
77 |
tgatgaattaggtgaggtgcaaaataccagaattgtgtgatgagaatggagcatatgtcgtggtgacagattttggcgtgggagacaggacagacttcat |
176 |
Q |
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| T |
41232892 |
tgattaatcaggtgaggtgtaaaataccacaatactgcgatgaaaatggagcaaccgtagtggtaacagactatggtgaaggagacagaacagacttcat |
41232991 |
T |
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| Q |
177 |
catgagcccacgtggcta |
194 |
Q |
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| T |
41232992 |
aatgagtccacgaggcta |
41233009 |
T |
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