View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19053_low_2 (Length: 590)

Name: NF19053_low_2
Description: NF19053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19053_low_2
NF19053_low_2
[»] chr7 (1 HSPs)
chr7 (16-578)||(45304727-45305289)
[»] chr2 (2 HSPs)
chr2 (294-445)||(42575801-42575951)
chr2 (270-357)||(42564164-42564251)
[»] chr6 (2 HSPs)
chr6 (326-475)||(14956437-14956586)
chr6 (332-457)||(14951618-14951743)


Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 16 - 578
Target Start/End: Complemental strand, 45305289 - 45304727
Alignment:
Q  16 tcataattgatacacataaacctataaaactagttaggtatgttaaatgggcaaccatttagaggagacttcatgatttgatttccgctacgaaaaaatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45305289 tcataattgatacacataaacctataaaactagttaggtatgttaaatgggcaaccatttagaggagacttcatgatttgatttccgctacgaaaaaatt 45305190  T
Q  116 gttaggtttctgctttaggtctgggcttactgggcatatggaagagttcttcaaaaataagcatgatcaacccaatatgggaggaaaattatggatcaca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45305189 gttaggtttctgctttaggtctgggcttactgggcatatggaagagttcttcaaaaataagcatgatcaacccaatatgggaggaaaattatggatcaca 45305090  T
Q  216 gtgagaaaaggtttggcaataatccaataaagtccacaagctatagtagttaccgctcaataacctcagggatagaagcaatcatatggtaacatgggcc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45305089 gtgagaaaaggtttggcaataatccaataaagtccacaagctatagtagttacagctcaataacctcagggatagaagcaatcatatggtaacatgggcc 45304990  T
Q  316 ccaagagtcctttctataaggagaggaaaaccatgtatgacagcaacacaaggaatgatgttagttaaaaattcatcaaacatacaaaagatagaaagcc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45304989 ccaagagtcctttctataaggagaggaaaaccatgtatgacagcaacacaaggaatgatgttagtcaaaaattcatcaaacatacaaaagatagaaagcc 45304890  T
Q  416 tcctaggagagtttggctagcaatcatgaagcttatttcttgaaaccgtcgtgggttgggacacccctgaccatgagaagtcaagcccttaaatggctct 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45304889 tcctaggagagtttggctagcaatcatgaagcttatttcttgaaaccgtcgtgggttgggacacccctgaccatgagaagtcaagcccttaaatggctct 45304790  T
Q  516 tgttccttaactgttgactgcaatattactgtgatggtaaagctgggggtatttgtttatttt 578  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45304789 tgttccttaactgttgactgcaatattactgtgatggtaaagctgggggtatttgtttatttt 45304727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 294 - 445
Target Start/End: Original strand, 42575801 - 42575951
Alignment:
Q  294 caatcatatggtaacatgggccccaagagtcctttctataaggagaggaaaaccatgtatgacagcaacacaaggaatgatgttagttaaaaattcatca 393  Q
    |||||| ||| ||| |||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||| ||    
T  42575801 caatcagatgataatatggaccctaagagtcctttctataaggagaggaagaccatgtatgacaacaacacaaggaatgatgttag-tcaaaattcacca 42575899  T
Q  394 aacatacaaaagatagaaagcctcctaggagagtttggctagcaatcatgaa 445  Q
    ||||||||||||||| |||| ||||||||| ||  ||||||| ||| |||||    
T  42575900 aacatacaaaagataaaaagtctcctaggacaggctggctaggaattatgaa 42575951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 270 - 357
Target Start/End: Complemental strand, 42564251 - 42564164
Alignment:
Q  270 gctcaataacctcagggatagaagcaatcatatggtaacatgggccccaagagtcctttctataaggagaggaaaaccatgtatgaca 357  Q
    ||||||||| |  ||| ||||||||||||| ||| ||| |||  ||| |||||||||||||||||||||||||| |||||||||||||    
T  42564251 gctcaataagcataggaatagaagcaatcagatgataatatgaaccctaagagtcctttctataaggagaggaagaccatgtatgaca 42564164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 326 - 475
Target Start/End: Original strand, 14956437 - 14956586
Alignment:
Q  326 tttctataaggagaggaaaaccatgtatgacagcaacacaaggaatgatgttagttaaaaattcatcaaacatacaaaagatagaaagcctcctaggaga 425  Q
    ||||||||||| |  ||| | |||||||||||||||||||| |||||||| |||| ||||||||  | ||||||||||||||||||||||||||||||||    
T  14956437 tttctataaggtgtagaagatcatgtatgacagcaacacaatgaatgatgctagtaaaaaattcgcccaacatacaaaagatagaaagcctcctaggaga 14956536  T
Q  426 gtttggctagcaatcatgaagcttatttcttgaaaccgtcgtgggttggg 475  Q
    |  |||  |||||||||||| ||||||||||| ||| ||| |||||||||    
T  14956537 ggctggtcagcaatcatgaaacttatttcttggaactgtcctgggttggg 14956586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 332 - 457
Target Start/End: Original strand, 14951618 - 14951743
Alignment:
Q  332 taaggagaggaaaaccatgtatgacagcaacacaaggaatgatgttagttaaaaattcatcaaacatacaaaagatagaaagcctcctaggagagtttgg 431  Q
    |||||||||||| | | |||||||||| ||||||| || ||||| |||| ||||||| | |||||||||||||||||||||||||||||||||||  ||     
T  14951618 taaggagaggaagatcttgtatgacaggaacacaatgattgatgctagtaaaaaattaaccaaacatacaaaagatagaaagcctcctaggagaggctgt 14951717  T
Q  432 ctagcaatcatgaagcttatttcttg 457  Q
    | ||||||||||||||||||||||||    
T  14951718 ccagcaatcatgaagcttatttcttg 14951743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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