View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19053_low_6 (Length: 357)
Name: NF19053_low_6
Description: NF19053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19053_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 1699072 - 1699244
Alignment:
| Q |
19 |
tgttatacagaagaagttattagcgaggaaaatttacagtttagataatctttaaacacattacacatgtgataaaaggccaagttcagattcaaactgt |
118 |
Q |
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| T |
1699072 |
tgttatacagaagaagttattagcgaggaaaatttacagtttagataatctttaaacaaattacacatgtgataaaaggccaagttcagattcaaactgt |
1699171 |
T |
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| Q |
119 |
aatatgttgcatcatagaatgctttaattattggcctaggttggtatatgtaaaacaaaacgactctgtcatg |
191 |
Q |
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| T |
1699172 |
aatatgttgcatcatagaatgctttaattattggcctaggttggtatatataaaacaaaacgactctgtcatg |
1699244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 225 - 347
Target Start/End: Original strand, 1699251 - 1699373
Alignment:
| Q |
225 |
gttagtttttgaaagcactgtaatgcaatcgttagttagttatttatgcagttatgatttcagtttttagccttgaccctataacaagaactgaatgtgg |
324 |
Q |
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| T |
1699251 |
gttagtttttgaaagcactgtaatgcaatcgttagttagttatttatgcagttatgatttcagtttttagccttgaccctataacaagaactgaatgtgg |
1699350 |
T |
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| Q |
325 |
catggtaacaattacaccctttg |
347 |
Q |
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| T |
1699351 |
catggtaacaattacaccctttg |
1699373 |
T |
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