View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19053_low_9 (Length: 331)
Name: NF19053_low_9
Description: NF19053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19053_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 37626094 - 37626390
Alignment:
| Q |
17 |
tctttgcatgcatttccctcaataattaatgtattagtactatctaatttaatactataatcagatttataagtattgctaaaataaattaaaaaggtta |
116 |
Q |
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| T |
37626094 |
tctttgcatgcatttccctcaataattaatgtattagtactatctaatttaatactataatcagatttataagtattgctaaaataaaataaaaaggttt |
37626193 |
T |
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| Q |
117 |
gtgtggnnnnnnnngttgtagacgttttcaagaaatatttggacaagagtggcaatttgaaggagtcactcaccaaagatatttggggcatgttaagcct |
216 |
Q |
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| T |
37626194 |
gtgttgttttttg-gttgtagacgttttcaagaaatatttggacaagagtggcaatttcaaggagtcactcaccaaagatatttggggtatgttaagcct |
37626292 |
T |
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| Q |
217 |
atatgaggcatcacatttaggaacagaagatgaagaaatattaaagagagccatgaagttttcaagtgctcatctaaataagttaatcccacacctta |
314 |
Q |
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| T |
37626293 |
atatgaagcatcacatttaggaactgaagatgaagaaatattaaagagagccatgaagttttcaagtgctcatctaaatgagttaatcccacacctta |
37626390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 131 - 314
Target Start/End: Original strand, 37617825 - 37618008
Alignment:
| Q |
131 |
gttgtagacgttttcaagaaatatttggacaagagtggcaatttgaaggagtcactcaccaaagatatttggggcatgttaagcctatatgaggcatcac |
230 |
Q |
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| T |
37617825 |
gttgtagatgttttcaggaagtttttggacaagagtggcaatttcaatgaatcacttaccaaagatgtttggggtatgttgagtttatatgaggcatcat |
37617924 |
T |
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| Q |
231 |
atttaggaacagaagatgaagaaatattaaagagagccatgaagttttcaagtgctcatctaaataagttaatcccacacctta |
314 |
Q |
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| T |
37617925 |
atttagggacagaagatgaagaaatattaaaaaaagccatggaattttcaagggctcgtctaagtgagttaatcccacacctta |
37618008 |
T |
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