View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19054_high_10 (Length: 260)
Name: NF19054_high_10
Description: NF19054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19054_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 44567032 - 44567279
Alignment:
| Q |
1 |
cctccaactcctggggttctaagtcgcggtattggtctagaaggtttttctagtttgttggctggtctctggggtactggaatgggatcaacaactctaa |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44567032 |
cctccaactcctggggttcttagtcgcggtattggtctagaaggtttttctagtttgttggctggtctctggggtactggaatgggatcaacaactctaa |
44567131 |
T |
|
| Q |
101 |
ccgaaaatgttcacacaattgctgggacaaaaatgggaagccgcagaccagttcaattgggtgcgtgtcttctcatagtattatctctatttggtaagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44567132 |
ccgaaaatgttcacacaattgctgggacaaaaatgggaagccgcagaccagttcaattgggtgcgtgtcttctcatagtattatctctatttggtaagta |
44567231 |
T |
|
| Q |
201 |
tctattatcattctgttgttgcatttgcatctacctttgttactccat |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44567232 |
tctattatcattctgttgttgcatttgcatctacctttgttactccat |
44567279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 36031711 - 36031503
Alignment:
| Q |
1 |
cctccaactcctggggttctaagtcgcggtattggtctagaaggtttttctagtttgttggctggtctctggggtactggaatgggatcaacaactctaa |
100 |
Q |
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|||||||||||||||||||| |||||||| |||||||| |||||| |||||||| | ||||||||||||||||||||||||| ||||| || ||| ||| |
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| T |
36031711 |
cctccaactcctggggttcttagtcgcggaattggtctggaaggtctttctagtgttttggctggtctctggggtactggaactggatctaccactttaa |
36031612 |
T |
|
| Q |
101 |
ccgaaaatgttcacacaattgctgggacaaaaatgggaagccgcagaccagttcaattgggtgcgtgtcttctcatagtattatctctatttggtaagta |
200 |
Q |
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| T |
36031611 |
ctgaaaatgttcatacaattgctgtgactaaaatgggaagccgcagagcagttcaattgggtgcatgtattctgatagtgttatctctcgtgggtaagta |
36031512 |
T |
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| Q |
201 |
tctattatc |
209 |
Q |
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||||||||| |
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| T |
36031511 |
tctattatc |
36031503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 20124131 - 20124273
Alignment:
| Q |
1 |
cctccaactcctggggttctaagtcgcggtattggtctagaaggtttttctagtttgttggctggtctctggggtactggaatgggatcaacaactctaa |
100 |
Q |
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|||||||||||||| ||||| ||||| || |||||| | |||||| ||| |||| | ||||||||||||||||| ||||||| ||||| |||||| ||| |
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| T |
20124131 |
cctccaactcctggagttcttagtcgaggaattggtttggaaggtctttgtagtgtcttggctggtctctggggaactggaactggatctacaactttaa |
20124230 |
T |
|
| Q |
101 |
ccgaaaatgttcacacaattgctgggacaaaaatgggaagccg |
143 |
Q |
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| T |
20124231 |
ccgaaaatgttcatacaattgccgtgactaaaatgggaagccg |
20124273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 16069436 - 16069361
Alignment:
| Q |
150 |
agttcaattgggtgcgtgtcttctcatagtattatctctatttggtaagtatctattatcattctgttgttgcatt |
225 |
Q |
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||||||||| ||||| |||||||| | |||||||||||| |||| |||||||||||||||||| ||||||| |||| |
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| T |
16069436 |
agttcaattaggtgcatgtcttctgacagtattatctctctttgctaagtatctattatcattttgttgtttcatt |
16069361 |
T |
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