View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19054_high_3 (Length: 424)

Name: NF19054_high_3
Description: NF19054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19054_high_3
NF19054_high_3
[»] chr5 (11 HSPs)
chr5 (15-383)||(38282283-38282651)
chr5 (94-159)||(19187150-19187215)
chr5 (92-161)||(39753316-39753385)
chr5 (97-174)||(36974077-36974154)
chr5 (93-177)||(21067608-21067692)
chr5 (94-165)||(39031669-39031739)
chr5 (94-147)||(36603697-36603750)
chr5 (93-141)||(14122929-14122977)
chr5 (93-177)||(24233168-24233252)
chr5 (97-161)||(28988394-28988460)
chr5 (97-161)||(1179956-1180020)
[»] chr8 (6 HSPs)
chr8 (93-175)||(40995822-40995904)
chr8 (97-173)||(7222851-7222925)
chr8 (97-155)||(15111876-15111934)
chr8 (97-150)||(885714-885769)
chr8 (97-177)||(7304964-7305044)
chr8 (94-150)||(12000143-12000199)
[»] chr4 (11 HSPs)
chr4 (97-175)||(27756464-27756542)
chr4 (40-161)||(19328829-19328950)
chr4 (97-151)||(25474657-25474711)
chr4 (97-147)||(3427888-3427938)
chr4 (97-174)||(20032911-20032989)
chr4 (94-175)||(37193580-37193662)
chr4 (97-175)||(38509922-38510000)
chr4 (94-150)||(4687364-4687420)
chr4 (97-147)||(3913674-3913724)
chr4 (97-147)||(43159877-43159927)
chr4 (105-175)||(46871291-46871361)
[»] chr3 (9 HSPs)
chr3 (93-178)||(43178593-43178678)
chr3 (93-177)||(1294907-1294991)
chr3 (93-161)||(8936081-8936149)
chr3 (92-173)||(28957715-28957796)
chr3 (93-150)||(42388759-42388816)
chr3 (94-147)||(36563081-36563134)
chr3 (97-147)||(36545183-36545233)
chr3 (97-147)||(25938599-25938649)
chr3 (97-159)||(26841307-26841368)
[»] chr2 (8 HSPs)
chr2 (41-177)||(9521012-9521149)
chr2 (98-175)||(6983185-6983262)
chr2 (97-161)||(3037421-3037485)
chr2 (92-165)||(9116403-9116476)
chr2 (92-137)||(15371434-15371479)
chr2 (92-161)||(16634427-16634496)
chr2 (97-165)||(43077205-43077273)
chr2 (101-147)||(27322771-27322817)
[»] chr1 (10 HSPs)
chr1 (94-175)||(19940600-19940681)
chr1 (40-174)||(45484988-45485121)
chr1 (94-147)||(1408641-1408694)
chr1 (97-161)||(4941199-4941263)
chr1 (93-161)||(32022615-32022683)
chr1 (94-144)||(46289803-46289853)
chr1 (94-147)||(34663132-34663185)
chr1 (110-175)||(48768297-48768362)
chr1 (99-175)||(4635751-4635827)
chr1 (92-175)||(46591703-46591787)
[»] chr7 (7 HSPs)
chr7 (94-146)||(37720555-37720607)
chr7 (93-175)||(47903887-47903967)
chr7 (94-175)||(27916431-27916512)
chr7 (97-175)||(42468949-42469027)
chr7 (94-175)||(28710392-28710473)
chr7 (46-81)||(29127387-29127422)
chr7 (93-161)||(30486951-30487019)
[»] scaffold0272 (1 HSPs)
scaffold0272 (94-177)||(6099-6182)
[»] scaffold0009 (1 HSPs)
scaffold0009 (94-175)||(106492-106573)
[»] scaffold0316 (1 HSPs)
scaffold0316 (97-147)||(1307-1357)
[»] scaffold0027 (1 HSPs)
scaffold0027 (97-174)||(14224-14302)
[»] chr6 (1 HSPs)
chr6 (98-161)||(6253507-6253570)


Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 383
Target Start/End: Complemental strand, 38282651 - 38282283
Alignment:
Q  15 aaatagttcccaagcctaattttgatgggtcatgttaaccggtgctttcggggtactagttaagaaaactnnnnnnntgaagttttaaaatgaaaataac 114  Q
    |||||| | |||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||| |       |||| ||||||||||||||||||    
T  38282651 aaatagctgccaagcctaattttgatgcgtcatgttaaccggtgttctcgggatactagttaagaaaattaaaaatatgaaattttaaaatgaaaataac 38282552  T
Q  115 actttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttgactaccaatttttatactagggtttgcgaaacgaaagaca 214  Q
    |||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38282551 actttttatatttttaaagagttgacaacacaaattttaatgtaatatttattatatttgactatcaatttttatactagggtttgcgaaacgaaagaca 38282452  T
Q  215 ctttgtattnnnnnnnnnnnnnnnnnngacgtgcttcacactcacggacaaaggaatactactaaaatgcaatgtacgagtctcgtcccccggtctaaag 314  Q
    |||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38282451 ctttgtattaaaaaagtagtaaaaaaagacgtgcttcacactcacggacaaaggaatactactaaaatgcaatgtacgagtctcgtcccccggtctaaag 38282352  T
Q  315 acaatttgacattttcttttctttccattttggtaactaataaaacatgctctttatcccgtatataag 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38282351 acaatttgacattttcttttctttccattttggtaactaataaaatatgctctttatcccgtatataag 38282283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 19187215 - 19187150
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaa 159  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| |||||||    
T  19187215 aagttttaaaatgaaaacaacactttttatgcttttgaagagttgacaacacaaatttcaatgtaa 19187150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 39753316 - 39753385
Alignment:
Q  92 tgaagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaata 161  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| ||| |||||||||    
T  39753316 tgaagttttaaaatgaaagtaatactttttatgcttttgaagagttgacagcacaagtttcaatgtaata 39753385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 36974077 - 36974154
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttg 174  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||| ||||| || ||||| |||||||| || |||||    
T  36974077 ttttaaaatgaaaataacacattttatgtttttgaagagttgacaacacaagttctaatgcaatatttactacatttg 36974154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 21067692 - 21067608
Alignment:
Q  93 gaagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttgact 177  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||| ||||| ||||| ||| ||||||||| ||| || ||||||||    
T  21067692 gaagttttaaaatgaaagtactactttttatgcttttgaagagatgacaacacaagtttcaatgtaatacttactacatttgact 21067608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 39031739 - 39031669
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatattta 165  Q
    |||||||||||||||| ||| | |||||||| |||| || | ||||||||| ||||||||||||||||||||    
T  39031739 aagttttaaaatgaaagtaatattttttatg-ttttgaataattgacagcataaattttaatgtaatattta 39031669  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 36603697 - 36603750
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaa 147  Q
    |||||||||||||||| | |||||||||||| |||| ||||||||||| |||||    
T  36603697 aagttttaaaatgaaagtgacactttttatgtttttgaagagttgacaacacaa 36603750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 14122977 - 14122929
Alignment:
Q  93 gaagttttaaaatgaaaataacactttttatgcttttaaagagttgaca 141  Q
    ||||||||||||||||| ||||||||| ||||||||| || ||||||||    
T  14122977 gaagttttaaaatgaaagtaacactttatatgcttttgaatagttgaca 14122929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 24233252 - 24233168
Alignment:
Q  93 gaagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttgact 177  Q
    ||||||| || |||||| |||||||||||||  |||| || |||||||||||||| ||  |||| |||| |||||| ||||||||    
T  24233252 gaagtttgaagatgaaagtaacactttttatatttttgaaaagttgacagcacaagttccaatgcaatacttattacatttgact 24233168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 28988394 - 28988460
Alignment:
Q  97 ttttaaaatgaaaataacactttt--tatgcttttaaagagttgacagcacaaattttaatgtaata 161  Q
    ||||||||||||| ||||||||||  ||||||||| || |||||||  ||||||||| |||||||||    
T  28988394 ttttaaaatgaaagtaacactttttttatgcttttgaaaagttgacgacacaaatttcaatgtaata 28988460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 1180020 - 1179956
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaata 161  Q
    ||||||||| |||||||||||||||||| |||| |  |||||||| || || ||| |||||||||    
T  1180020 ttttaaaataaaaataacactttttatgttttttagaagttgacaacataagtttcaatgtaata 1179956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 40995822 - 40995904
Alignment:
Q  93 gaagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttga 175  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||||| ||| || ||||||    
T  40995822 gaagttttaaaatgaaaataacactttttatgtttttgaagagttgacaacacaaatttcaatgtaatacttactacatttga 40995904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 7222851 - 7222925
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatattt 173  Q
    ||||||||| ||| |||||||||||||| |||| || |||  ||||||||||||| |||||||||||||||||||||    
T  7222851 ttttaaaataaaagtaacactttttatgtttttgaatagt--acagcacaaatttcaatgtaatatttattatattt 7222925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 15111876 - 15111934
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaat 155  Q
    |||||||||||||||||||||||||||  |||| | ||||||||| ||||| |||||||    
T  15111876 ttttaaaatgaaaataacactttttatattttttaggagttgacaacacaagttttaat 15111934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 885769 - 885714
Alignment:
Q  97 ttttaaaatgaaaataaca--ctttttatgcttttaaagagttgacagcacaaatt 150  Q
    |||||||||||||||||||   ||||||| ||||||| ||||||||| ||||||||    
T  885769 ttttaaaatgaaaataacattttttttattcttttaaggagttgacaacacaaatt 885714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 7304964 - 7305044
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttgact 177  Q
    ||||||| |||||||||||  |||| ||||||| | ||||||||| ||||| ||| ||| ||||||||  || ||||||||    
T  7304964 ttttaaagtgaaaataacatattttctgcttttgaggagttgacaacacaagtttcaatataatatttgctacatttgact 7305044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 12000143 - 12000199
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaatt 150  Q
    |||||||||| ||||||||| | ||||||||||||| |   ||||||||||||||||    
T  12000143 aagttttaaagtgaaaataatattttttatgcttttgagatgttgacagcacaaatt 12000199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 27756542 - 27756464
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttga 175  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||| || ||||||    
T  27756542 ttttaaaatgaaaataacactttttatgcttttgaagagttgacaacacaaatttcaatgtaatacttactacatttga 27756464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 161
Target Start/End: Complemental strand, 19328950 - 19328829
Alignment:
Q  40 tgggtcatgttaaccggtgctttcggggtactagttaagaaaactnnnnnnntgaagttttaaaatgaaaataacactttttatgcttttaaagagttga 139  Q
    ||||||||||||||||||||    |||| ||| |||||| |||||       |||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  19328950 tgggtcatgttaaccggtgccccgggggcactggttaaggaaactaaaaaaatgaagttttaaaatgaaagtaacactttttatacttttgaagagttga 19328851  T
Q  140 cagcacaaattttaatgtaata 161  Q
     ||||||| ||  |||||||||    
T  19328850 tagcacaagttccaatgtaata 19328829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 25474657 - 25474711
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattt 151  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  25474657 ttttaaaatgaaaataacattttttatgcttttgaagagttgacaacacaaattt 25474711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 3427938 - 3427888
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaa 147  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  3427938 ttttaaaatgaaaataacactttttatgtttttgaagagttgacaacacaa 3427888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 20032989 - 20032911
Alignment:
Q  97 ttttaaaatgaa-aataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttg 174  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||  |||| ||  |||||||||||||||| |||||    
T  20032989 ttttaaaatgaagaataacactttttatgtttttgaagagttgacaatacaagttccaatgtaatatttattacatttg 20032911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 37193662 - 37193580
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaatttt-aatgtaatatttattatatttga 175  Q
    |||||||||| ||||||||||||||||||||| ||| | |||||||| || ||| |||| |||| |||||||| || ||||||    
T  37193662 aagttttaaagtgaaaataacactttttatgcatttgaggagttgaccgctcaagttttcaatgcaatatttactacatttga 37193580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 38510000 - 38509922
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttga 175  Q
    ||||||||| |||||||||||||| || ||||| | ||||||||| ||||| ||  |||| ||||||||||| ||||||    
T  38510000 ttttaaaataaaaataacacttttcatacttttgaggagttgacaacacaagttccaatgcaatatttattacatttga 38509922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 4687364 - 4687420
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaatt 150  Q
    |||||||||| | ||||||||||||||||||||||| |  |||||| ||||||||||    
T  4687364 aagttttaaagtaaaaataacactttttatgcttttgagaagttgatagcacaaatt 4687420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 3913724 - 3913674
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaa 147  Q
    ||||||||||||| ||||||||||||| ||||| ||||||| ||| |||||    
T  3913724 ttttaaaatgaaagtaacactttttatacttttgaagagttaacaacacaa 3913674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 43159927 - 43159877
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaa 147  Q
    |||||||||||||||||||||||||| | |||| | ||||||||| |||||    
T  43159927 ttttaaaatgaaaataacactttttaagtttttgaggagttgacaacacaa 43159877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 46871361 - 46871291
Alignment:
Q  105 tgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttga 175  Q
    ||||| |||||||||||||  |||  | ||||||||| ||||| ||| |||||||||||| ||||||||||    
T  46871361 tgaaagtaacactttttatattttcgaggagttgacaacacaagtttcaatgtaatattttttatatttga 46871291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 43178678 - 43178593
Alignment:
Q  93 gaagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttgacta 178  Q
    ||||||||||||| ||| ||||| ||||||| ||||| || ||||||||| |||||||| |||||||||||||||| |||||||||    
T  43178678 gaagttttaaaataaaagtaacattttttatacttttcaaaagttgacagtacaaatttcaatgtaatatttattacatttgacta 43178593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 1294907 - 1294991
Alignment:
Q  93 gaagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttgact 177  Q
    ||||||||||||||||| ||||| |||||||| || | ||||| ||||||||||||||| ||||||||| |||||| ||||||||    
T  1294907 gaagttttaaaatgaaagtaacattttttatgtttatgaagagctgacagcacaaatttcaatgtaatacttattacatttgact 1294991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 8936081 - 8936149
Alignment:
Q  93 gaagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaata 161  Q
    ||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||| ||| |||||||||    
T  8936081 gaagttttaaaataaaagtaacactttttatgcttttcaagggttgacagcacaagtttcaatgtaata 8936149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 28957715 - 28957796
Alignment:
Q  92 tgaagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatattt 173  Q
    |||| ||||||||| |||||||||||||||||  |||  |||||||||||  |  |||||||||||||||||||||||||||    
T  28957715 tgaacttttaaaataaaaataacactttttatattttcgaagagttgacaatatgaattttaatgtaatatttattatattt 28957796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 42388816 - 42388759
Alignment:
Q  93 gaagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaatt 150  Q
    |||||||||| ||||||||||||||||||||| |||| || |||||||||||||||||    
T  42388816 gaagttttaagatgaaaataacactttttatgtttttgaaaagttgacagcacaaatt 42388759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 36563134 - 36563081
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaa 147  Q
    |||||||||| ||||||||||||||||||||||||| | ||||||||| |||||    
T  36563134 aagttttaaagtgaaaataacactttttatgcttttgaggagttgacatcacaa 36563081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 36545183 - 36545233
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaa 147  Q
    ||||||| ||||||||||||||||||||||||| | ||||||||| |||||    
T  36545183 ttttaaagtgaaaataacactttttatgcttttgaggagttgacatcacaa 36545233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 25938649 - 25938599
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaa 147  Q
    ||||||| ||||||||||||||||||||||||| | || |||||| |||||    
T  25938649 ttttaaagtgaaaataacactttttatgcttttgaggaattgacaacacaa 25938599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 26841307 - 26841368
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaa 159  Q
    ||||||| | |||||||||||||||||| |||| ||||||||||| | ||||||| |||||||    
T  26841307 ttttaaagtaaaaataacactttttatgatttt-aagagttgacaacccaaatttcaatgtaa 26841368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 9521012 - 9521149
Alignment:
Q  41 gggtcatgttaaccggtgctttcggggtactagttaagaaaactnnnnnnntgaa-gttttaaaatgaaaataacactttttatgcttttaaagagttga 139  Q
    |||||||||||||||||||||  || | | | ||||||||||||       |||| |||||||||| ||| ||||||||||||| ||||| || ||||||    
T  9521012 gggtcatgttaaccggtgcttcaggagcattggttaagaaaactaaaaaaatgaaagttttaaaataaaagtaacactttttatacttttcaaaagttga 9521111  T
Q  140 cagcacaaattttaatgtaatatttattatatttgact 177  Q
    |||||||| ||| ||||||||| |||| | ||||||||    
T  9521112 cagcacaagtttcaatgtaatacttatcacatttgact 9521149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 6983185 - 6983262
Alignment:
Q  98 tttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttga 175  Q
    |||||| ||||||||||||||||||||||||| | ||||||||| ||||| ||  ||||||||| ||  |||||||||    
T  6983185 tttaaagtgaaaataacactttttatgctttttaggagttgacaccacaagttccaatgtaatactttctatatttga 6983262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 3037485 - 3037421
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaata 161  Q
    ||||||||| ||| ||||||||||||| ||||||| ||||||||| ||||||||  |||||||||    
T  3037485 ttttaaaatcaaagtaacactttttatacttttaaggagttgacaacacaaattccaatgtaata 3037421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 9116403 - 9116476
Alignment:
Q  92 tgaagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatattta 165  Q
    |||||||||||||| ||| ||||||||| ||| ||||| || |||||||||||||| ||  |||| ||||||||    
T  9116403 tgaagttttaaaataaaagtaacactttgtatacttttcaaaagttgacagcacaagttccaatgcaatattta 9116476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 15371434 - 15371479
Alignment:
Q  92 tgaagttttaaaatgaaaataacactttttatgcttttaaagagtt 137  Q
    |||||||||||| ||||||||||||||||||| |||||||| ||||    
T  15371434 tgaagttttaaagtgaaaataacactttttatccttttaaaaagtt 15371479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 16634496 - 16634427
Alignment:
Q  92 tgaagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaata 161  Q
    ||||||||||||||  ||  |||| ||||||||||||| || |||||||||||||||||  |||||||||    
T  16634496 tgaagttttaaaatagaagcaacattttttatgcttttgaaaagttgacagcacaaattccaatgtaata 16634427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 43077205 - 43077273
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatattta 165  Q
    ||||||| |||||||||||  |||||||||||| | ||||||| ||||||||||  ||| |||||||||    
T  43077205 ttttaaattgaaaataacatattttatgcttttgaggagttgatagcacaaattccaatataatattta 43077273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 27322817 - 27322771
Alignment:
Q  101 aaaatgaaaataacactttttatgcttttaaagagttgacagcacaa 147  Q
    ||||| ||| ||| ||||||||||||||| |||||||||||||||||    
T  27322817 aaaataaaagtaatactttttatgcttttcaagagttgacagcacaa 27322771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 19940600 - 19940681
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttga 175  Q
    |||||||||| ||||||||||||||||||||||||| | |||||||||||| || ||| |||| |||| ||| || ||||||    
T  19940600 aagttttaaagtgaaaataacactttttatgcttttgaggagttgacagcataagtttcaatgcaatacttactacatttga 19940681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 45484988 - 45485121
Alignment:
Q  40 tgggtcatgttaaccggtgctttcggggtactagttaagaaaactnnnnnnntgaagttttaaaatgaaaataacactttttatgcttttaaagagttga 139  Q
    |||||||||||||||||||||| ||||| ||| |||||| || ||        ||| ||||||||| |||||||||| |||||||||||| |  ||||||    
T  45484988 tgggtcatgttaaccggtgctt-cggggcactggttaaggaacctaaaaaaaagaaattttaaaataaaaataacacattttatgctttttagaagttga 45485086  T
Q  140 cagcacaaattttaatgtaatatttattatatttg 174  Q
    || ||||||||| |||| |||| ||| ||||||||    
T  45485087 caacacaaatttcaatgcaatacttactatatttg 45485121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 1408694 - 1408641
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaa 147  Q
    |||||||||||||||||||| |||||||||| |||| ||||||||||| |||||    
T  1408694 aagttttaaaatgaaaataaaactttttatgtttttgaagagttgacaacacaa 1408641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 4941199 - 4941263
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaata 161  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||| ||||| ||| |||| ||||    
T  4941199 ttttaaaataaaaataacactttttatgcttttgaggagttgacaacacaagtttcaatgcaata 4941263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 32022615 - 32022683
Alignment:
Q  93 gaagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaata 161  Q
    ||||||||||||| ||| ||| ||||||||| |||||||| ||||||||| |||| ||| |||||||||    
T  32022615 gaagttttaaaataaaagtaatactttttatacttttaaaaagttgacagtacaattttcaatgtaata 32022683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 46289803 - 46289853
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagca 144  Q
    |||||||||| |||||||||||||||||||| |||| ||| ||||||||||    
T  46289803 aagttttaaagtgaaaataacactttttatgtttttgaagtgttgacagca 46289853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 34663185 - 34663132
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaa 147  Q
    |||||||||||||||| ||||||||||||| ||||| || ||||||||| ||||    
T  34663185 aagttttaaaatgaaagtaacactttttatacttttgaaaagttgacagtacaa 34663132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 48768362 - 48768297
Alignment:
Q  110 ataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttga 175  Q
    |||||||||||||| ||||||||||||||||| ||||| ||  ||| |||||| || |||||||||    
T  48768362 ataacactttttatacttttaaagagttgacaacacaagttccaatataatatctactatatttga 48768297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 4635751 - 4635827
Alignment:
Q  99 ttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttga 175  Q
    ||||| ||||||||||| ||||||||||| | | |||||||||||| |  ||  ||||||||| ||| |||||||||    
T  4635751 ttaaagtgaaaataacattttttatgcttatgaggagttgacagcaaattttccaatgtaatacttactatatttga 4635827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 46591787 - 46591703
Alignment:
Q  92 tgaagttttaaaatgaaaataacactttttatgc-ttttaaagagttgacagcacaaattttaatgtaatatttattatatttga 175  Q
    |||||||||| || |||||||||| ||||||||| |||||||||||| | |  |||| ||| || |||||||||  |||||||||    
T  46591787 tgaagttttataaagaaaataacattttttatgctttttaaagagttaataaaacaagtttcaaggtaatatttgctatatttga 46591703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 37720555 - 37720607
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcaca 146  Q
    |||||||||| ||||||||||||||||||||||||| | ||||||||||||||    
T  37720555 aagttttaaagtgaaaataacactttttatgcttttgaggagttgacagcaca 37720607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 47903887 - 47903967
Alignment:
Q  93 gaagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttga 175  Q
    ||||||||||||||||||||||||  |||||| |||| | ||||||||| ||||||||  ||||||||| |||||| ||||||    
T  47903887 gaagttttaaaatgaaaataacac--tttatgtttttgaggagttgacaacacaaattccaatgtaatacttattacatttga 47903967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 27916431 - 27916512
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttga 175  Q
    |||||||||| |||||||||||| ||||| | |||| | ||||||||||||||||||  |||  |||| |||||||||||||    
T  27916431 aagttttaaagtgaaaataacacattttacgtttttgaggagttgacagcacaaattccaatacaatacttattatatttga 27916512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 42468949 - 42469027
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttga 175  Q
    |||||||||||||| ||||||||||||| | ||||||||| |||| ||||| ||| ||| ||||| ||| || ||||||    
T  42468949 ttttaaaatgaaaacaacactttttatgttattaaagagtggacatcacaagtttcaatttaatacttactacatttga 42469027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 28710392 - 28710473
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttga 175  Q
    |||||||||| ||||||||||| |||||||| |||| | |||||  |||||||||||  ||||||||| ||| || ||||||    
T  28710392 aagttttaaagtgaaaataacaatttttatgtttttgaggagttagcagcacaaattccaatgtaatacttactacatttga 28710473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 29127422 - 29127387
Alignment:
Q  46 atgttaaccggtgctttcggggtactagttaagaaa 81  Q
    |||||||||||||| |||||||||||||||||||||    
T  29127422 atgttaaccggtgccttcggggtactagttaagaaa 29127387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 30486951 - 30487019
Alignment:
Q  93 gaagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaata 161  Q
    ||||||||||||| ||| ||||| |||||||  |||| || ||||||| |||||||||| |||| ||||    
T  30486951 gaagttttaaaataaaagtaacattttttatattttttaaaagttgacggcacaaatttcaatgcaata 30487019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 6182 - 6099
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttgact 177  Q
    |||||||||||||||| |||||||||||||| |||| || ||||||||||| |||||  |||| |||| ||| || ||||||||    
T  6182 aagttttaaaatgaaagtaacactttttatgtttttgaaaagttgacagcataaattccaatgcaatacttactacatttgact 6099  T

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Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 106492 - 106573
Alignment:
Q  94 aagttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttga 175  Q
    |||||||||| ||||||||||||||||||||||||  |  |||||| ||||||| ||  ||| |||| ||||||||||||||    
T  106492 aagttttaaagtgaaaataacactttttatgctttcgagaagttgatagcacaagttccaatttaatgtttattatatttga 106573  T

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Target: scaffold0316 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 1357 - 1307
Alignment:
Q  97 ttttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaa 147  Q
    ||||||||||||||||||| ||||||||||||| | ||||||||| |||||    
T  1357 ttttaaaatgaaaataacattttttatgcttttgatgagttgacaacacaa 1307  T

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Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 14302 - 14224
Alignment:
Q  97 ttttaaaatgaa-aataacactttttatgcttttaaagagttgacagcacaaattttaatgtaatatttattatatttg 174  Q
    ||||||||| || ||||||||||||||||||||| | ||||||||| ||||| || ||||| |||||||| || |||||    
T  14302 ttttaaaataaagaataacactttttatgcttttgaggagttgacaacacaagttctaatgcaatatttactacatttg 14224  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 6253570 - 6253507
Alignment:
Q  98 tttaaaatgaaaataacactttttatgcttttaaagagttgacagcacaaattttaatgtaata 161  Q
    |||||| ||||||||| ||||||||| ||||| |  ||||||||||||||||| |||| |||||    
T  6253570 tttaaagtgaaaataatactttttattcttttgagtagttgacagcacaaattctaatataata 6253507  T

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