View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19054_high_9 (Length: 322)
Name: NF19054_high_9
Description: NF19054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19054_high_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 46061868 - 46062170
Alignment:
| Q |
20 |
attaccttccgaagcattccctcaagacgttgaatctcgttcttcgcataatctgcaccttttaccatactgctcttagcaagttttaagtagaggttgc |
119 |
Q |
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| T |
46061868 |
attaccttccgaagcattccctcaagacgttgaatctcgttcttcgcataatctgcaccttttaccatactgctcttagcaagttttaagtagaggttgc |
46061967 |
T |
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| Q |
120 |
catatctgaaataccacaaaaaccaacatcagataattaatatcaaacaacttaactagggcctcacnnnnnnnccaattcaaattataaaactcaagca |
219 |
Q |
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| T |
46061968 |
catatctgaaataccacaaaaaccaacatcagataattaatatcaaacaacttaactagggcctcacaaaaaaaccaattcaaattataaaactcaagca |
46062067 |
T |
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| Q |
220 |
aaccagaacaaatcaagaaatgtgatatcattcaaaccttgcagtagaacccttaagcgtattaactttctctacaagtctggaaaagacaatcttcttc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46062068 |
aaccagaacaaatcaagaaatgtgatatcattcaaaccttgcagtagaacccttaagcgtattaactttctctacaagtctggaaaagacaatcttcttc |
46062167 |
T |
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| Q |
320 |
tca |
322 |
Q |
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| T |
46062168 |
tca |
46062170 |
T |
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