View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19054_low_10 (Length: 329)
Name: NF19054_low_10
Description: NF19054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19054_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 47712441 - 47712741
Alignment:
| Q |
19 |
aactccgccacctctccaccatctccatcccccaacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacat |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712441 |
aactccgccacctctccaccatctccatcccccaacgaccgaataatatcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacat |
47712540 |
T |
|
| Q |
119 |
cctccaaatacttctcaaacctctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaattt |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712541 |
cctccaaatacttctcaaacctctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaattt |
47712640 |
T |
|
| Q |
219 |
ccatcgattagccccaataaacacctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctataagaataa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47712641 |
ccatcgattagccccaataaacacctcaggcaactccaaaaccttcctcaatggcaccaacacatccttcctcaaacgatcacgaaccctataagcataa |
47712740 |
T |
|
| Q |
319 |
t |
319 |
Q |
| |
|
| |
|
|
| T |
47712741 |
t |
47712741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 19795541 - 19795842
Alignment:
| Q |
18 |
caactccgccacctctccaccatctccatcccccaacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcaca |
117 |
Q |
| |
|
|||||| ||||| |||||||||||| |||| |||| ||| ||||| || ||||||||||||||||||||||| || ||||||||||| | |||||| |
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| T |
19795541 |
caactcagccacttctccaccatcttcatcatccaaagactctataatctcgtgaggaagcaaagcaccagcagcaatagtagtcttccctgccttcaca |
19795640 |
T |
|
| Q |
118 |
tcctccaaatacttctcaaacctctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatt |
217 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| ||||| |||||||| |
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| T |
19795641 |
tcctccaagtacttctcaaacctctccttatcatgcttcaaaaacttctccttataaaacttcatcgccacagaagcaaccctattgtatggaatcaaac |
19795740 |
T |
|
| Q |
218 |
tccatcgattagccccaataaacacctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctataagaata |
317 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |
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| T |
19795741 |
cccattgattagcaccaataaacacctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaccgatcacgaaccctataagcata |
19795840 |
T |
|
| Q |
318 |
at |
319 |
Q |
| |
|
|| |
|
|
| T |
19795841 |
at |
19795842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 19786046 - 19785745
Alignment:
| Q |
18 |
caactccgccacctctccaccatctccatcccccaacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcaca |
117 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||| || |||||||| || | |||||| |
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|
| T |
19786046 |
caactcagcaacttctccaccatctccatcccccaaagactctataatctggtgaggaagcaaagcaccagcagcaatagtagtctttcctgccttcaca |
19785947 |
T |
|
| Q |
118 |
tcctccaaatacttctcaaacctctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatt |
217 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||||||||||||| || |||||||||| |||||||||||| ||||| || |||||||||||||| |
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|
| T |
19785946 |
tccttcaagtacttctcaaacctctccttatcatgcttcaaaaacttttccttataaaacttcatcgccacagaagcaactctattgtaaggaatcaaac |
19785847 |
T |
|
| Q |
218 |
tccatcgattagccccaataaacacctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctataagaata |
317 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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|
| T |
19785846 |
cccattgattagcaccaataaacacctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaacgatcacgaaccctataagcata |
19785747 |
T |
|
| Q |
318 |
at |
319 |
Q |
| |
|
|| |
|
|
| T |
19785746 |
at |
19785745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 69 - 319
Target Start/End: Original strand, 15834899 - 15835149
Alignment:
| Q |
69 |
atgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatcatgcttcaaaaacttctct |
168 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| | |||||||||| ||| |||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
15834899 |
atgaggaagcaaagcaccagcagccatagtagtcttccctgccttcacatcctgcaagtacttctcaaacctctcctcatcatgcttcaaaaacttctcc |
15834998 |
T |
|
| Q |
169 |
ttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagccccaataaacacctcaggcaactccaaaaccttcctca |
268 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| || ||||||||||| |||| |||||||||||||||||||||||||||| | ||| ||||||||| |
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|
| T |
15834999 |
ttataaaactccatggccacagaagcaaccctattataaggaatcaaaccccattgattagccccaataaacacctcaggcaattgcaacgccttcctca |
15835098 |
T |
|
| Q |
269 |
acggcaccaacacatccttcctcaaacgatcacgaaccctataagaataat |
319 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
15835099 |
acggcaccaacacatctttcctcaaacgatcacgaaccctataagcataat |
15835149 |
T |
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