View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19054_low_2 (Length: 555)
Name: NF19054_low_2
Description: NF19054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19054_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 44566495 - 44566707
Alignment:
| Q |
19 |
gcctttgggtttggcagtcacatggacatttgcttttttgctgactgaaaacggccggatgaaacattgtcaagttaatacttctgatacaatgacatca |
118 |
Q |
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| T |
44566495 |
gcctttgggtttggcagtcacatggacatttgcttttttgctgactgaaaacggccggatgaaacattgtcaagttaatacttctgatacaatgacatca |
44566594 |
T |
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| Q |
119 |
cccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattggaaaatggctattgtgatgtgcgtcgtttccttaatctcttctg |
218 |
Q |
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| T |
44566595 |
cccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattggaaaatggctattgtgatgtgtgtcgtttccttaatctcttctg |
44566694 |
T |
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| Q |
219 |
tggattcggttag |
231 |
Q |
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| T |
44566695 |
tggattcggttag |
44566707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 289 - 419
Target Start/End: Original strand, 44566765 - 44566895
Alignment:
| Q |
289 |
gactctgagtacgtttatagtctaacttgatctcgttcaattgaacaacacagtgcatgactcgattttctatccctaaaataagatttgaaattttagc |
388 |
Q |
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| T |
44566765 |
gactctgaatacgttgatagtctaacttgatctcgttcaatggaacaacacagtgcatgactcgattttctatccctaaaataagatttgaaattttagc |
44566864 |
T |
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| Q |
389 |
accgcagaatgaaacttgtgtttttattgat |
419 |
Q |
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| T |
44566865 |
accgcagaatgaaacttgtgtttttattgat |
44566895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 455 - 555
Target Start/End: Original strand, 44566892 - 44566992
Alignment:
| Q |
455 |
tgatctatgaaatgtttacagtatgctaagtcaaaattgaaatgatatatataatcattgtactttgttgttgaggttcatttgttttaaccttgtaggt |
554 |
Q |
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| T |
44566892 |
tgatctatgaaatgtttacagtatgctaagtcaaaattgaaatgatatatataatcattgtactttgttgttgaggttcatttgttttaaccttgtaggt |
44566991 |
T |
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| Q |
555 |
t |
555 |
Q |
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| T |
44566992 |
t |
44566992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 36032553 - 36032397
Alignment:
| Q |
75 |
ggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattg |
174 |
Q |
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| T |
36032553 |
ggatgaaatattgtcgagttgatacttcgcatgcaatcaaatcatccccatggtttaaatttccctatccattgcaatggggtactcctgtcttccactg |
36032454 |
T |
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| Q |
175 |
gaaaatggctattgtgatgtgcgtcgtttccttaatctcttctgtggattcggttag |
231 |
Q |
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| T |
36032453 |
gaaaatggctcttgtgatgtgtgtggtttccttaatctcatccgtggattcggttag |
36032397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 429 - 502
Target Start/End: Complemental strand, 36031910 - 36031837
Alignment:
| Q |
429 |
tagataagtcaaataatagaattaactgatctatgaaatgtttacagtatgctaagtcaaaattgaaatgatat |
502 |
Q |
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| T |
36031910 |
tagataagtcaaataatagagtttactgatctatgaaagattaacaatatgctatatcaaaatttaaatcatat |
36031837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 75 - 231
Target Start/End: Original strand, 20122450 - 20122606
Alignment:
| Q |
75 |
ggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattg |
174 |
Q |
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| T |
20122450 |
ggatgaagcattgtcgggttgatacttctcatgcattgaaatcctctccatggtttagatttccctatccgttacaatggggtgttcctgtctttcactg |
20122549 |
T |
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| Q |
175 |
gaaaatggctattgtgatgtgcgtcgtttccttaatctcttctgtggattcggttag |
231 |
Q |
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| T |
20122550 |
gaaaatggctcttgtaatgtgtgtggtttccttaatctcatccgtggattcggttag |
20122606 |
T |
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