View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19054_low_3 (Length: 542)

Name: NF19054_low_3
Description: NF19054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19054_low_3
NF19054_low_3
[»] chr6 (33 HSPs)
chr6 (16-542)||(29477082-29477608)
chr6 (138-514)||(29522794-29523167)
chr6 (366-438)||(25539532-25539604)
chr6 (109-203)||(29826721-29826815)
chr6 (111-188)||(26937766-26937843)
chr6 (366-425)||(27215441-27215500)
chr6 (393-438)||(26647495-26647540)
chr6 (393-438)||(26753463-26753508)
chr6 (393-438)||(27337216-27337261)
chr6 (393-438)||(27397956-27398001)
chr6 (325-430)||(28227900-28228005)
chr6 (366-438)||(25484048-25484120)
chr6 (394-438)||(27697707-27697751)
chr6 (393-436)||(26885086-26885129)
chr6 (366-436)||(25580711-25580781)
chr6 (366-436)||(26143857-26143927)
chr6 (396-438)||(27592142-27592184)
chr6 (393-438)||(25511908-25511953)
chr6 (393-438)||(27676741-27676786)
chr6 (385-433)||(28182126-28182174)
chr6 (129-188)||(26849467-26849526)
chr6 (366-448)||(25492430-25492512)
chr6 (396-438)||(26056941-26056983)
chr6 (396-438)||(26076911-26076953)
chr6 (109-167)||(29695871-29695929)
chr6 (393-430)||(27530430-27530467)
chr6 (385-438)||(28243803-28243856)
chr6 (385-430)||(28326486-28326531)
chr6 (385-430)||(28504122-28504167)
chr6 (111-147)||(2185560-2185596)
chr6 (366-438)||(26656954-26657026)
chr6 (366-438)||(26762925-26762997)
chr6 (111-203)||(29759817-29759909)
[»] chr5 (1 HSPs)
chr5 (111-188)||(16691604-16691681)
[»] chr1 (3 HSPs)
chr1 (111-189)||(26136625-26136703)
chr1 (366-436)||(28163499-28163569)
chr1 (366-435)||(28126799-28126868)
[»] scaffold0038 (2 HSPs)
scaffold0038 (325-430)||(28398-28503)
scaffold0038 (385-438)||(43965-44018)
[»] chr8 (3 HSPs)
chr8 (413-502)||(16441092-16441181)
chr8 (323-503)||(31906000-31906180)
chr8 (111-167)||(12589406-12589462)
[»] scaffold0019 (1 HSPs)
scaffold0019 (398-433)||(57420-57455)


Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 542
Target Start/End: Complemental strand, 29477608 - 29477082
Alignment:
Q  16 ccttacacgttgcaaattacccagttggattagattctagtttgagagaagtgtatccacaattggagttggaatctcataaagtccttgagttggggat 115  Q
    |||||||||||||  |||||||||||||||| |||||| | ||| ||||||| |  |  || |||||||||||||||||| ||||||||  | |||||||    
T  29477608 ccttacacgttgccgattacccagttggattggattctcgattgggagaagttttccggcatttggagttggaatctcatgaagtccttacggtggggat 29477509  T
Q  116 ctatgggattggcggaatagggaaaacaacacatgctcgagcagtttataatatgattgcagatcaatttgaagcctcgtgttttctttccgatattaga 215  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||| ||||||||||||||||| ||||||||    
T  29477508 ctatgggattggcggaatagggaaaacaacacttgctcgagcagtttataatacgatttcggatcaatttgaaacctcgtgttttctttccaatattaga 29477409  T
Q  216 gaaagttcaaatacacaaagtttagcgcaccttcaaaatatacttctttctgaaatgactggattgaaagatattcagataagagatactagtaaagggg 315  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||      
T  29477408 aaaagttcaaatacacaaagtttagcgcaccttcaaaatatacttctttcagaaatgactggattgaaagatattcagttaaaagatactagtaaaggaa 29477309  T
Q  316 tttcagaaataaagcacaggctccaccaaaagaaagttcttctcatcatagatgatgtggacagactagagcaaatggaggctttggctggaggacttga 415  Q
    |||| |||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29477308 tttccgaaataaagcacaggctctaccgaaagaaagttcttctcatcctagatgatgtggacagactagagcaaatggaggctttggctggaggacttga 29477209  T
Q  416 ttggtttggtcctggtagcagagctgtcattacaacacgggataggcatttgctagcacatcacggggttgagagaagatatgaagtacaaaagttaaat 515  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  || |||||||||||||||||| ||||||||| ||||||||    
T  29477208 ttggtttggtcctggtagcagagttgtcattacaacacgggataggcatttgctagcatttcgcggggttgagagaagatacgaagtacaagagttaaat 29477109  T
Q  516 gacgtagatgctcttgatttgcttagc 542  Q
    |||||||||||||||||||||||||||    
T  29477108 gacgtagatgctcttgatttgcttagc 29477082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 138 - 514
Target Start/End: Original strand, 29522794 - 29523167
Alignment:
Q  138 aaaacaacacatgctcgagcagtttataatatgattgcagatcaatttgaagcctcgtgttttctttccgatattagagaaagttcaaatacacaaagtt 237  Q
    ||||||| || ||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||   ||| | || |||| |||||||| |||  | |    
T  29522794 aaaacaaaacttgctcgagcggtttataatatgattgcagaccaatttgaagcttcgtgttttcttgatgatgtcagtgaaaattcaaataaacatggat 29522893  T
Q  238 tagcgcaccttcaaaatatacttctttctgaaatgactggattgaaagatattcagataagagatactagtaaaggggtttcagaaataaagcacaggct 337  Q
    ||| |||||| |||||||| ||||||||| |||||   ||  || ||||||||  | |  || || |    ||||| ||||||  |||||| |  | |||    
T  29522894 tagtgcacctccaaaatatgcttctttctaaaatg---ggggtggaagatatttggcttggaaatgcctacaaaggagtttcaataataaaacgaaagct 29522990  T
Q  338 ccaccaaaagaaagttcttctcatcatagatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggtttggtcctggtagcaga 437  Q
     ||| | ||||||||||||||  || ||||| | ||||||| |||||||||| |||||  | ||| |||||||  ||||||||||||| |||||||||||    
T  29522991 tcacaataagaaagttcttctggtcctagataacgtggacacactagagcaattggagtttctggttggaggaactgattggtttggttctggtagcaga 29523090  T
Q  438 gctgtcattacaacacgggataggcatttgctagcacatcacggggttgagagaagatatgaagtacaaaagttaaa 514  Q
    | | |  |||||||  | || |  ||||||||||||  ||| ||| |||| ||||||||||| |||||| |||||||    
T  29523091 gttattgttacaacttgcgacaaacatttgctagcatttcatgggattgaaagaagatatgaggtacaagagttaaa 29523167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 438
Target Start/End: Original strand, 25539532 - 25539604
Alignment:
Q  366 gatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    |||||||| |||| |||||||||  | ||||||||||||||||||||||||||||| |||||||| |||||||    
T  25539532 gatgatgttgacaaactagagcagctagaggctttggctggaggacttgattggttcggtcctggaagcagag 25539604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 29826721 - 29826815
Alignment:
Q  109 tggggatctatgggattggcggaatagggaaaacaacacatgctcgagcagtttataatatgattgcagatcaatttgaagcctcgtgttttctt 203  Q
    ||||||| ||||| ||||||||| | || |||||||||| |||||||||| |||||||||||||||  ||| ||||||||  || ||||||||||    
T  29826721 tggggatttatggaattggcggattgggtaaaacaacacttgctcgagcaatttataatatgattggtgataaatttgaatgcttgtgttttctt 29826815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 26937766 - 26937843
Alignment:
Q  111 gggatctatgggattggcggaatagggaaaacaacacatgctcgagcagtttataatatgattgcagatcaatttgaa 188  Q
    ||||||||||||||||||||||| || ||| |||||| ||| |||||| |||||||| ||||||  ||||||||||||    
T  26937766 gggatctatgggattggcggaattggtaaatcaacacttgcacgagcaatttataatttgattggtgatcaatttgaa 26937843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 425
Target Start/End: Original strand, 27215441 - 27215500
Alignment:
Q  366 gatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggtttggt 425  Q
    |||||||| |||| |||||||||  | |||||||||||||||||||||||||||||||||    
T  27215441 gatgatgttgacaaactagagcagctagaggctttggctggaggacttgattggtttggt 27215500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 26647495 - 26647540
Alignment:
Q  393 gaggctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  26647495 gaggctttggctggaggacttgattggttcggtcctggaagcagag 26647540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 26753463 - 26753508
Alignment:
Q  393 gaggctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  26753463 gaggctttggctggaggacttgattggttcggtcctggaagcagag 26753508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 27337261 - 27337216
Alignment:
Q  393 gaggctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  27337261 gaggctttggctggaggacttgattggttcggtcctggaagcagag 27337216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 27398001 - 27397956
Alignment:
Q  393 gaggctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  27398001 gaggctttggctggaggacttgattggttcggtcctggaagcagag 27397956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 430
Target Start/End: Original strand, 28227900 - 28228005
Alignment:
Q  325 taaagcacaggctccaccaaaagaaagttcttctcatcatagatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggtttgg 424  Q
    ||||||| ||||| |||| ||||||||||||  | ||  | ||||||||  ||| |||| ||||| ||  || |||||||||||||||||||||||||||    
T  28227900 taaagcaaaggcttcaccgaaagaaagttctattgattctcgatgatgttcacaaactaaagcaattgcgggttttggctggaggacttgattggtttgg 28227999  T
Q  425 tcctgg 430  Q
    ||||||    
T  28228000 tcctgg 28228005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 438
Target Start/End: Original strand, 25484048 - 25484120
Alignment:
Q  366 gatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    |||||||| |||| ||| |||||  | ||||||||||||||||||||||||||||| |||| ||| |||||||    
T  25484048 gatgatgttgacaaactggagcagctagaggctttggctggaggacttgattggttcggtcatggaagcagag 25484120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 27697751 - 27697707
Alignment:
Q  394 aggctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||    
T  27697751 aggctttggctggaggactcgattggtttggtcctggaagcagag 27697707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 436
Target Start/End: Original strand, 26885086 - 26885129
Alignment:
Q  393 gaggctttggctggaggacttgattggtttggtcctggtagcag 436  Q
    |||||||||||||||||||||||||||||||||| ||| |||||    
T  26885086 gaggctttggctggaggacttgattggtttggtcgtggaagcag 26885129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 436
Target Start/End: Original strand, 25580711 - 25580781
Alignment:
Q  366 gatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggtttggtcctggtagcag 436  Q
    |||||||| |||| ||| |||||  | ||||||||||||||||||||||||||||| |||| ||| |||||    
T  25580711 gatgatgttgacaaactggagcagctagaggctttggctggaggacttgattggttcggtcatggaagcag 25580781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 436
Target Start/End: Original strand, 26143857 - 26143927
Alignment:
Q  366 gatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggtttggtcctggtagcag 436  Q
    |||||||| |||| ||| |||||  | ||||||||||||||||||||||||||||| |||| ||| |||||    
T  26143857 gatgatgttgacaaactggagcagctagaggctttggctggaggacttgattggttcggtcatggaagcag 26143927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 438
Target Start/End: Complemental strand, 27592184 - 27592142
Alignment:
Q  396 gctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    |||||||||||||||||||||||||| |||||||| |||||||    
T  27592184 gctttggctggaggacttgattggttcggtcctggaagcagag 27592142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 25511908 - 25511953
Alignment:
Q  393 gaggctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||    
T  25511908 gaggctttggctggaggacttgactggttcggtcctggaagcagag 25511953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 27676786 - 27676741
Alignment:
Q  393 gaggctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||||    
T  27676786 gaggctttggctggaagactcgattggtttggtcctggaagcagag 27676741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 433
Target Start/End: Original strand, 28182126 - 28182174
Alignment:
Q  385 agcaaatggaggctttggctggaggacttgattggtttggtcctggtag 433  Q
    ||||| || ||| ||||||||||||| ||||||||||||||||||||||    
T  28182126 agcaattgcaggttttggctggaggaattgattggtttggtcctggtag 28182174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 26849467 - 26849526
Alignment:
Q  129 ggaatagggaaaacaacacatgctcgagcagtttataatatgattgcagatcaatttgaa 188  Q
    ||||| || |||||||||| ||||| |||||||||||||  |||||| ||||||||||||    
T  26849467 ggaatgggaaaaacaacacttgctcaagcagtttataattcgattgctgatcaatttgaa 26849526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 448
Target Start/End: Complemental strand, 25492512 - 25492430
Alignment:
Q  366 gatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggtttggtcctggtagcagagctgtcattac 448  Q
    |||||||| |||||||| |||||  | |||| |||||||| ||||||||||||||| |||| ||| ||| ||| | |||||||    
T  25492512 gatgatgttgacagactggagcagctagaggatttggctgaaggacttgattggttcggtcgtggaagcggagttatcattac 25492430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 438
Target Start/End: Original strand, 26056941 - 26056983
Alignment:
Q  396 gctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    |||||||||||||||||||||||||| |||| ||| |||||||    
T  26056941 gctttggctggaggacttgattggttcggtcttggaagcagag 26056983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 438
Target Start/End: Original strand, 26076911 - 26076953
Alignment:
Q  396 gctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    |||||||||||||||||||||||||| |||| ||| |||||||    
T  26076911 gctttggctggaggacttgattggttcggtcttggaagcagag 26076953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 29695929 - 29695871
Alignment:
Q  109 tggggatctatgggattggcggaatagggaaaacaacacatgctcgagcagtttataat 167  Q
    |||||||| |||||||||| |||||||||||||| || | ||||| || ||||||||||    
T  29695929 tggggatccatgggattggtggaatagggaaaactactcttgctctagaagtttataat 29695871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 27530467 - 27530430
Alignment:
Q  393 gaggctttggctggaggacttgattggtttggtcctgg 430  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  27530467 gaggccttggctggaggacttgattggttcggtcctgg 27530430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 28243803 - 28243856
Alignment:
Q  385 agcaaatggaggctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    ||||| || ||| ||| |||||||||||||||||||| ||||||||||| ||||    
T  28243803 agcaattgcaggttttagctggaggacttgattggttcggtcctggtagtagag 28243856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 430
Target Start/End: Original strand, 28326486 - 28326531
Alignment:
Q  385 agcaaatggaggctttggctggaggacttgattggtttggtcctgg 430  Q
    ||||| || ||| |||||||||||||||||||||||| ||||||||    
T  28326486 agcaattgcaggttttggctggaggacttgattggttcggtcctgg 28326531  T

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Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 430
Target Start/End: Original strand, 28504122 - 28504167
Alignment:
Q  385 agcaaatggaggctttggctggaggacttgattggtttggtcctgg 430  Q
    ||||| || ||| |||||||||||||||||||||||| ||||||||    
T  28504122 agcaattgcaggttttggctggaggacttgattggttcggtcctgg 28504167  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 2185560 - 2185596
Alignment:
Q  111 gggatctatgggattggcggaatagggaaaacaacac 147  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  2185560 gggatccatgggattggcggaataggcaaaacaacac 2185596  T

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Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 438
Target Start/End: Original strand, 26656954 - 26657026
Alignment:
Q  366 gatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    |||||||| |||| ||| |||||  | ||||||||||| ||||||||||||||||| |||  ||| |||||||    
T  26656954 gatgatgttgacaaactggagcagctagaggctttggcaggaggacttgattggttcggttgtggaagcagag 26657026  T

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Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 438
Target Start/End: Original strand, 26762925 - 26762997
Alignment:
Q  366 gatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    |||||||| |||| ||| |||||  | ||||||||||| ||||||||||||||||| |||  ||| |||||||    
T  26762925 gatgatgttgacaaactggagcagctagaggctttggcaggaggacttgattggttcggttgtggaagcagag 26762997  T

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Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 29759909 - 29759817
Alignment:
Q  111 gggatctatgggattggcggaatagggaaaacaacacatgctcgagcagtttataatatgattgcagatcaatttgaagcctcgtgttttctt 203  Q
    |||||| ||||||| || ||||| ||||||||||| | ||||| | | ||||||||| |||||||  || ||||||| || || |||||||||    
T  29759909 gggatccatgggatgggtggaattgggaaaacaactcttgctctatctgtttataatttgattgcccatgaatttgatgcttcatgttttctt 29759817  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 16691604 - 16691681
Alignment:
Q  111 gggatctatgggattggcggaatagggaaaacaacacatgctcgagcagtttataatatgattgcagatcaatttgaa 188  Q
    |||||| |||| ||||| ||||| || |||||||||| |||||||||| |||||||| ||||||| ||||||||||||    
T  16691604 gggatccatggaattggaggaatcggtaaaacaacacttgctcgagcaatttataatttgattgctgatcaatttgaa 16691681  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 26136625 - 26136703
Alignment:
Q  111 gggatctatgggattggcggaatagggaaaacaacacatgctcgagcagtttataatatgattgcagatcaatttgaag 189  Q
    ||||| ||||| | ||| ||| |||| |||||||||| | ||||||||||||||||| ||||||| |||||||||||||    
T  26136625 gggatatatggaagtggaggattaggtaaaacaacacttactcgagcagtttataatttgattgcggatcaatttgaag 26136703  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 436
Target Start/End: Complemental strand, 28163569 - 28163499
Alignment:
Q  366 gatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggtttggtcctggtagcag 436  Q
    |||||||| |||| ||| |||||  |||||||||||||||||||||| |||||||| |||| ||| |||||    
T  28163569 gatgatgtcgacaaactggagcagctggaggctttggctggaggactcgattggttcggtcgtggaagcag 28163499  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 435
Target Start/End: Complemental strand, 28126868 - 28126799
Alignment:
Q  366 gatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggtttggtcctggtagca 435  Q
    |||||||| |||| ||| |||||  | ||||||||||||||||||||||||||||| |||| ||| ||||    
T  28126868 gatgatgtcgacaaactggagcagctagaggctttggctggaggacttgattggttcggtcgtggaagca 28126799  T

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Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 430
Target Start/End: Original strand, 28398 - 28503
Alignment:
Q  325 taaagcacaggctccaccaaaagaaagttcttctcatcatagatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggtttgg 424  Q
    ||||||| ||||| |||| ||||||||||||  | ||  | ||||||||  ||| |||| ||||| ||  || |||||||||||||||||||||||||||    
T  28398 taaagcaaaggcttcaccgaaagaaagttctattgattctcgatgatgttcacaaactaaagcaattgcgggttttggctggaggacttgattggtttgg 28497  T
Q  425 tcctgg 430  Q
    ||||||    
T  28498 tcctgg 28503  T

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Target: scaffold0038; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 43965 - 44018
Alignment:
Q  385 agcaaatggaggctttggctggaggacttgattggtttggtcctggtagcagag 438  Q
    ||||| || ||| ||| |||||||||||||||||||| ||||||||||| ||||    
T  43965 agcaattgcaggttttagctggaggacttgattggttcggtcctggtagtagag 44018  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 502
Target Start/End: Original strand, 16441092 - 16441181
Alignment:
Q  413 tgattggtttggtcctggtagcagagctgtcattacaacacgggataggcatttgctagcacatcacggggttgagagaagatatgaagt 502  Q
    |||||||| ||||||||||||||||| | |||||||||| ||||| |  || |||||||||  ||| |||||||| |||| |||||||||    
T  16441092 tgattggtatggtcctggtagcagagttatcattacaactcgggacaaacagttgctagcaagtcatggggttgaaagaacatatgaagt 16441181  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 503
Target Start/End: Original strand, 31906000 - 31906180
Alignment:
Q  323 aataaagcacaggctccaccaaaagaaagttcttctcatcatagatgatgtggacagactagagcaaatggaggctttggctggaggacttgattggttt 422  Q
    |||||||||||| ||||| ||||| || |||||| | ||  |||||||||| || | | |||| ||| ||||||| |||| ||||||| |  ||||| ||    
T  31906000 aataaagcacagactccaacaaaaaaaggttcttttgattctagatgatgttgataaaatagaacaactggaggccttggttggaggattctattggctt 31906099  T
Q  423 ggtcctggtagcagagctgtcattacaacacgggataggcatttgctagcacatcacggggttgagagaagatatgaagta 503  Q
    ||| |||| ||||||| | | ||||||||  |||| |  |||||| |  ||  |||||||||| |||||| ||||||||||    
T  31906100 ggttctggaagcagagttattattacaactagggacaaacatttgttgtcaagtcacggggttaagagaacatatgaagta 31906180  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 12589406 - 12589462
Alignment:
Q  111 gggatctatgggattggcggaatagggaaaacaacacatgctcgagcagtttataat 167  Q
    |||||| |||||||||| |||||||||||||| || | ||||| || ||||||||||    
T  12589406 gggatccatgggattggtggaatagggaaaactactcttgctctagaagtttataat 12589462  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 433
Target Start/End: Complemental strand, 57455 - 57420
Alignment:
Q  398 tttggctggaggacttgattggtttggtcctggtag 433  Q
    ||||||||||||||||||||||||||||||||||||    
T  57455 tttggctggaggacttgattggtttggtcctggtag 57420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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