View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19054_low_6 (Length: 393)
Name: NF19054_low_6
Description: NF19054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19054_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 383
Target Start/End: Original strand, 47712373 - 47712741
Alignment:
| Q |
15 |
cacagacagcaagacaattcctcatcttccctttcttgagcaaatcatccaccattctcgtccactgtaactccgccacctctccaccatctccatcccc |
114 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712373 |
cacacacagcaagacaattcctcatcttccctttcttgagcaaatcatccaccattctcgtccactgtaactccgccacctctccaccatctccatcccc |
47712472 |
T |
|
| Q |
115 |
caacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatca |
214 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712473 |
caacgaccgaataatatcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatca |
47712572 |
T |
|
| Q |
215 |
tgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagccccaataaacacctcaggca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712573 |
tgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagccccaataaacacctcaggca |
47712672 |
T |
|
| Q |
315 |
actccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctataagaataat |
383 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47712673 |
actccaaaaccttcctcaatggcaccaacacatccttcctcaaacgatcacgaaccctataagcataat |
47712741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 383
Target Start/End: Original strand, 19795474 - 19795842
Alignment:
| Q |
15 |
cacagacagcaagacaattcctcatcttccctttcttgagcaaatcatccaccattctcgtccactgtaactccgccacctctccaccatctccatcccc |
114 |
Q |
| |
|
|||| |||||||||||||||||||| || || ||||||||||||||||| || |||||| ||||||| ||||| ||||| |||||||||||| |||| | |
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| T |
19795474 |
cacacacagcaagacaattcctcatttttcccttcttgagcaaatcatcaacaattctcttccactgcaactcagccacttctccaccatcttcatcatc |
19795573 |
T |
|
| Q |
115 |
caacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatca |
214 |
Q |
| |
|
||| ||| ||||| || ||||||||||||||||||||||| || ||||||||||| | |||||||||||||| |||||||||||||||| |||||| |
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| T |
19795574 |
caaagactctataatctcgtgaggaagcaaagcaccagcagcaatagtagtcttccctgccttcacatcctccaagtacttctcaaacctctccttatca |
19795673 |
T |
|
| Q |
215 |
tgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagccccaataaacacctcaggca |
314 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||| |||||||| ||||| |||||||| |||| ||||||| ||||||||||||||||||| |
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| T |
19795674 |
tgcttcaaaaacttctccttataaaacttcatcgccacagaagcaaccctattgtatggaatcaaaccccattgattagcaccaataaacacctcaggca |
19795773 |
T |
|
| Q |
315 |
actccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctataagaataat |
383 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |
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|
| T |
19795774 |
actccaacaccttcctcaacggcaccaacacatctttcctcaaccgatcacgaaccctataagcataat |
19795842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 383
Target Start/End: Complemental strand, 19786105 - 19785745
Alignment:
| Q |
23 |
gcaagacaattcctcatcttccctttcttgagcaaatcatccaccattctcgtccactgtaactccgccacctctccaccatctccatcccccaacgacc |
122 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||| || |||||| ||||||| ||||| || || ||||||||||||||||||||||| ||| |
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|
| T |
19786105 |
gcaagacaatttttcatctttcctttcttgagcaaatcatcaacaattctcttccactgcaactcagcaacttctccaccatctccatcccccaaagact |
19786006 |
T |
|
| Q |
123 |
gaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatcatgcttcaa |
222 |
Q |
| |
|
||||| | ||||||||||||||||||||||| || |||||||| || | |||||||||| ||| |||||||||||||||| |||||||||||||| |
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|
| T |
19786005 |
ctataatctggtgaggaagcaaagcaccagcagcaatagtagtctttcctgccttcacatccttcaagtacttctcaaacctctccttatcatgcttcaa |
19785906 |
T |
|
| Q |
223 |
aaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagccccaataaacacctcaggcaactccaaa |
322 |
Q |
| |
|
|||||| || |||||||||| |||||||||||| ||||| || |||||||||||||| |||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
19785905 |
aaacttttccttataaaacttcatcgccacagaagcaactctattgtaaggaatcaaaccccattgattagcaccaataaacacctcaggcaactccaac |
19785806 |
T |
|
| Q |
323 |
accttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctataagaataat |
383 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
19785805 |
accttcctcaacggcaccaacacatctttcctcaaacgatcacgaaccctataagcataat |
19785745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 23 - 383
Target Start/End: Original strand, 15834789 - 15835149
Alignment:
| Q |
23 |
gcaagacaattcctcatcttccctttcttgagcaaatcatccaccattctcgtccactgtaactccgccacctctccaccatctccatcccccaacgacc |
122 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||| || |||||| ||||||| ||||| |||| |||||||||| ||||| | || ||| |
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|
| T |
15834789 |
gcaagacaatttttcatctttcctttcttgagcaaatcatcaacaattctcttccactgcaactcatccacttctccaccatatccattcaaaaaagact |
15834888 |
T |
|
| Q |
123 |
gaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatcatgcttcaa |
222 |
Q |
| |
|
||||| | |||||||||||||||||||||||| || ||||||||||| | |||||||||| ||| |||||||||||||||| | |||||||||||| |
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|
| T |
15834889 |
ttataatcttatgaggaagcaaagcaccagcagccatagtagtcttccctgccttcacatcctgcaagtacttctcaaacctctcctcatcatgcttcaa |
15834988 |
T |
|
| Q |
223 |
aaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagccccaataaacacctcaggcaactccaaa |
322 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| |||||||| || ||||||||||| |||| |||||||||||||||||||||||||||| | ||| |
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|
| T |
15834989 |
aaacttctccttataaaactccatggccacagaagcaaccctattataaggaatcaaaccccattgattagccccaataaacacctcaggcaattgcaac |
15835088 |
T |
|
| Q |
323 |
accttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctataagaataat |
383 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
15835089 |
gccttcctcaacggcaccaacacatctttcctcaaacgatcacgaaccctataagcataat |
15835149 |
T |
|
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