View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19054_low_8 (Length: 357)
Name: NF19054_low_8
Description: NF19054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19054_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 5634742 - 5635067
Alignment:
| Q |
13 |
aatatgtattaataaaaatttaagatttaaattgaaaagaaacgacgactaaaaactcatttcacatgtcgattttgtatcgatgagttgtttcaatata |
112 |
Q |
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| T |
5634742 |
aatatgtattaataaaaatttaagacctaaattgaaaagaaacgaccactaaaaactcattccatatgtcgattttgtaacgatgagttgtttcaatata |
5634841 |
T |
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| Q |
113 |
aaacttgtaaccagnnnnnnnncaaatgatataagcatttcatattttcctagttttctctcctatacacacttgtatatcacaaacaatgaccgccggc |
212 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5634842 |
aaacttgtaaccagttttttttcaaatgatataagcatttcatattttcctagttttctctcctatacacacttgtatatcacaaacaatgaccgccggc |
5634941 |
T |
|
| Q |
213 |
agcatcatatttgttacaaattttttgtagaattgtccttgttcttgtttatttctcctttattggtccgacttcaacatcactgtctttagtgcgtgtg |
312 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5634942 |
agcatcatatttgttacaaaaattttgtagaattgtccttgttcttgtttatttctcctttattggtccgacttcaacatcactgtctttagtgcgtgtg |
5635041 |
T |
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| Q |
313 |
caaaaagaccagtgttatcacaattg |
338 |
Q |
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|||||||||||||||||||||||||| |
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| T |
5635042 |
caaaaagaccagtgttatcacaattg |
5635067 |
T |
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