View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19054_low_9 (Length: 339)

Name: NF19054_low_9
Description: NF19054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19054_low_9
NF19054_low_9
[»] chr4 (7 HSPs)
chr4 (5-339)||(31245309-31245643)
chr4 (5-258)||(31019310-31019563)
chr4 (5-259)||(31029191-31029445)
chr4 (112-322)||(31158866-31159076)
chr4 (5-77)||(31477463-31477535)
chr4 (1-59)||(31158755-31158813)
chr4 (5-62)||(31527919-31527976)
[»] chr6 (7 HSPs)
chr6 (5-339)||(13609360-13609694)
chr6 (4-64)||(33389587-33389647)
chr6 (23-62)||(33411487-33411526)
chr6 (4-62)||(33059078-33059136)
chr6 (4-62)||(33273307-33273365)
chr6 (22-58)||(9168304-9168340)
chr6 (22-58)||(33287075-33287111)
[»] chr7 (1 HSPs)
chr7 (28-339)||(14724588-14724898)
[»] chr5 (1 HSPs)
chr5 (28-326)||(17598864-17599168)
[»] scaffold0428 (1 HSPs)
scaffold0428 (4-62)||(8275-8333)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 31245643 - 31245309
Alignment:
Q  5 tccattcagatacatctcgaccatacaaaaatgagcccaacactttaattgctagtggaacgccagtggcatatgttagtgcatcatatgccaaatctat 104  Q
    |||||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||| |||| ||||||||||||||||||||| || ||| | |||    
T  31245643 tccattcagagacatctcggccatacaaaaatgagcccaaaactttaattgctaatggaaggccattggcatatgttagtgcatcatctgtcaagtatat 31245544  T
Q  105 gtaaccgctcatgatattatcacttttgaaagctttcctacaaaacaattgaagggcattattatgatccaagggtcgaactttgtaaacttcatctgct 204  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||    
T  31245543 gtaaccgctcatgatatcatcactcttgaaagccttcctacaaaacaattgaagggcattattatgatccaagagtcgaactttgtacacttcatctact 31245444  T
Q  205 ccatgctctcccaagatatggccatttcttgaaattaaaatgattctactccctgtgcctagacactctcgtgtcatggccaaattatccagttgttcaa 304  Q
    |||||||||| |||||||||  ||| ||| |||||||  ||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||    
T  31245443 ccatgctctctcaagatatgaacatctctagaaattatgatgattctactccctgtgcctagccattctcgtgtcatagccaatttatccagttgttcaa 31245344  T
Q  305 ctttatcaacgttatcaagaactacaagggatttt 339  Q
    ||| |||||| ||||||||||||| ||||||||||    
T  31245343 cttgatcaacattatcaagaactataagggatttt 31245309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 31019310 - 31019563
Alignment:
Q  5 tccattcagatacatctcgaccatacaaaaatgagcccaacactttaattgctagtggaacgccagtggcatatgttagtgcatcatatgccaaatctat 104  Q
    ||||||| || | |||||||||| |||||||||||||||| ||||||||||||||||| | |||| ||||||| | ||| |  |||  |||| | | |||    
T  31019310 tccattcggagatatctcgaccaaacaaaaatgagcccaatactttaattgctagtggtaggccattggcataagatagcgtgtcaagtgcc-agtttat 31019408  T
Q  105 -gtaaccgctcatgatattatcacttttgaaagctttcctacaaaacaattgaagggcattattatgatccaagggtcgaactttgtaaacttcatctgc 203  Q
      ||||| ||||| |||| ||||  ||||||||||||   |||||| |||||||| |  ||  | | || |||| || |||||||||||||||||||  |    
T  31019409 cataaccactcataatatgatcaagtttgaaagctttttgacaaaataattgaagagagttggtctcattcaagagtggaactttgtaaacttcatcaac 31019508  T
Q  204 tccatgctctcccaagatatggccatttcttgaaattaaaatgattctactccct 258  Q
    ||||| |||   |||||||||  ||| ||| ||||||| ||||||||||||||||    
T  31019509 tccatactcattcaagatatgctcatctctagaaattataatgattctactccct 31019563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 31029191 - 31029445
Alignment:
Q  5 tccattcagatacatctcgaccatacaaaaatgagcccaacactttaattgctagtggaacgccagtggcatatgttagtgcatcatatgccaaatctat 104  Q
    |||||||||| | |||||||||| |||||||||||||||| |||||||| |||||||| | |||| ||||||| | |||||  |||  |||| | | |||    
T  31029191 tccattcagagatatctcgaccaaacaaaaatgagcccaatactttaatagctagtggtaggccattggcataagatagtgtgtcaagtgcc-attttat 31029289  T
Q  105 -gtaaccgctcatgatattatcacttttgaaagctttcctacaaaacaattgaagggcattattatgatccaagggtcgaactttgtaaacttcatctgc 203  Q
      ||||| ||||| | ||  |||  ||||||||||||   |||||| |||||||| |  ||  | | || |||| || |||||||||||||||||||  |    
T  31029290 cataaccactcataacatgctcaagtttgaaagctttttgacaaaataattgaagagagttggtctcattcaagagtggaactttgtaaacttcatcaac 31029389  T
Q  204 tccatgctctcccaagatatggccatttcttgaaattaaaatgattctactccctg 259  Q
    ||||| |||   |||||||||  ||| ||| ||||||| |||||||||||||||||    
T  31029390 tccatactcattcaagatatgctcatctctagaaattataatgattctactccctg 31029445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 322
Target Start/End: Original strand, 31158866 - 31159076
Alignment:
Q  112 ctcatgatattatcacttttgaaagctttcctacaaaacaattgaagggcattattatgatccaagggtcgaactttgtaaacttcatctgctccatgct 211  Q
    ||||| |||| ||||  ||||||||||||   ||||||||||||||| |  ||| |   || |||| || |||||||||||||| ||||  |||||| ||    
T  31158866 ctcataatatgatcaagtttgaaagctttttgacaaaacaattgaagagagttagtcccattcaagagtggaactttgtaaactacatcaactccatact 31158965  T
Q  212 ctcccaagatatggccatttcttgaaattaaaatgattctactccctgtgcctagacactctcgtgtcatggccaaattatccagttgttcaactttatc 311  Q
    ||  |||||||||  ||| ||| ||||||| || ||||||||||||||  ||||  || || ||  |||  || || ||||| |||||||||||||||||    
T  31158966 ctttcaagatatgttcatctctagaaattataacgattctactccctgcacctaagcattcacgattcacagctaatttatcaagttgttcaactttatc 31159065  T
Q  312 aacgttatcaa 322  Q
    ||| |||||||    
T  31159066 aacattatcaa 31159076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 31477535 - 31477463
Alignment:
Q  5 tccattcagatacatctcgaccatacaaaaatgagcccaacactttaattgctagtggaacgccagtggcata 77  Q
    |||||||||||| ||| |||||| |||||||||| ||||| ||||||||||| ||||| | |||| |||||||    
T  31477535 tccattcagatatatcccgaccaaacaaaaatgaacccaatactttaattgcaagtggtaggccattggcata 31477463  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 31158755 - 31158813
Alignment:
Q  1 cttttccattcagatacatctcgaccatacaaaaatgagcccaacactttaattgctag 59  Q
    |||||||||||| | |  ||||||||| |||||||||| ||||| ||||||||||||||    
T  31158755 cttttccattcatagatgtctcgaccaaacaaaaatgatcccaatactttaattgctag 31158813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 31527919 - 31527976
Alignment:
Q  5 tccattcagatacatctcgaccatacaaaaatgagcccaacactttaattgctagtgg 62  Q
    |||||||| | | |||||||||| ||||||||||||||||  ||||||| ||||||||    
T  31527919 tccattcataaatatctcgaccaaacaaaaatgagcccaatgctttaatcgctagtgg 31527976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 8e-92; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 13609694 - 13609360
Alignment:
Q  5 tccattcagatacatctcgaccatacaaaaatgagcccaacactttaattgctagtggaacgccagtggcatatgttagtgcatcatatgccaaatctat 104  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||   |||||| ||||| ||||||||| ||| |||      
T  13609694 tccattcagagacatctcgaccatacaaaaatgagcccaacacttcaattgctagtggaatgccatcagcatattttagtacatcatatgtcaagtctgc 13609595  T
Q  105 gtaaccgctcatgatattatcacttttgaaagctttcctacaaaacaattgaagggcattattatgatccaagggtcgaactttgtaaacttcatctgct 204  Q
     ||||| |||| ||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |||| || | ||| ||||  |||| ||||||| ||    
T  13609594 ataaccactcaagatatcatcacttttgaaagctttcctacaaaacaatcgaagggcatcattaagatctaatgctcgtacttcataaatttcatctact 13609495  T
Q  205 ccatgctctcccaagatatggccatttcttgaaattaaaatgattctactccctgtgcctagacactctcgtgtcatggccaaattatccagttgttcaa 304  Q
    |||||||||| |||||||||||||| ||| |||||||  || |||||||||||||  |||||||| |||||||| ||| |||  ||||||||||||||||    
T  13609494 ccatgctctctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccagttgttcaa 13609395  T
Q  305 ctttatcaacgttatcaagaactacaagggatttt 339  Q
    |||||||||| ||||||||||||||||||||||||    
T  13609394 ctttatcaacattatcaagaactacaagggatttt 13609360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 33389587 - 33389647
Alignment:
Q  4 ttccattcagatacatctcgaccatacaaaaatgagcccaacactttaattgctagtggaa 64  Q
    ||||||||||  ||||  |||||| |||||||||||||||| |||||||||||||||||||    
T  33389587 ttccattcagtcacattacgaccaaacaaaaatgagcccaatactttaattgctagtggaa 33389647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 33411487 - 33411526
Alignment:
Q  23 gaccatacaaaaatgagcccaacactttaattgctagtgg 62  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  33411487 gaccaaacaaaaatgagcccaatactttaattgctagtgg 33411526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 33059078 - 33059136
Alignment:
Q  4 ttccattcagatacatctcgaccatacaaaaatgagcccaacactttaattgctagtgg 62  Q
    ||||||||||  ||||  |||||| ||||||| |||||||| |||||||||||||||||    
T  33059078 ttccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtgg 33059136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 33273307 - 33273365
Alignment:
Q  4 ttccattcagatacatctcgaccatacaaaaatgagcccaacactttaattgctagtgg 62  Q
    ||||||||||  ||||  |||||| |||||||||||||||| ||| |||||||||||||    
T  33273307 ttccattcagtcacattacgaccaaacaaaaatgagcccaatactataattgctagtgg 33273365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 9168304 - 9168340
Alignment:
Q  22 cgaccatacaaaaatgagcccaacactttaattgcta 58  Q
    |||||| |||||||||||||||| |||||||||||||    
T  9168304 cgaccaaacaaaaatgagcccaatactttaattgcta 9168340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 33287075 - 33287111
Alignment:
Q  22 cgaccatacaaaaatgagcccaacactttaattgcta 58  Q
    |||||| |||||||||||||||| |||||||||||||    
T  33287075 cgaccaaacaaaaatgagcccaatactttaattgcta 33287111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 339
Target Start/End: Complemental strand, 14724898 - 14724588
Alignment:
Q  28 tacaaaaatgagcccaacactttaattgctagt--ggaacgccagtggcatatgttagtgcatcatatgccaaatctatgtaaccgctcatgatattatc 125  Q
    ||||||||||| ||||||||||||||||||| |  | ||  ||  ||||||||   ||| |||||| || | | | ||||||||||||||||| ||  ||    
T  14724898 tacaaaaatgatcccaacactttaattgctaatatgcaagacctttggcatattcgagtacatcatctgtcgagtttatgtaaccgctcatgacatcgtc 14724799  T
Q  126 acttttgaaagctttcctacaaaacaattgaagggcattattatgatccaagggtcgaactttgtaaacttcatctgctccatgctctcccaagatatgg 225  Q
    | |||| ||||||||||||||||||||||||||||||| ||||||||  | | ||||||||||||||||||||||| ||||||||||||  |||||||||    
T  14724798 aatttttaaagctttcctacaaaacaattgaagggcatcattatgatttatgagtcgaactttgtaaacttcatctactccatgctctctgaagatatgg 14724699  T
Q  226 ccatttcttgaaattaaaatgattctactccctgtgcctagacactctcgtgtcatggccaaattatccagttgttcaactttatcaacgttatcaagaa 325  Q
    | || ||| || ||||  ||||||||||| ||||||||||| || | || | |||||||||| || || ||||||||||||   | ||| ||||||||||    
T  14724698 ctatctctagatattacgatgattctacttcctgtgcctagccattatcatttcatggccaatttttcaagttgttcaact---tgaacattatcaagaa 14724602  T
Q  326 ctacaagggatttt 339  Q
    || |||| ||||||    
T  14724601 cttcaagagatttt 14724588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 28 - 326
Target Start/End: Original strand, 17598864 - 17599168
Alignment:
Q  28 tacaaaaatgagcccaacactttaattgctagt--ggaacgccagtggcatatgttagtgcatcatatgccaaatctatgtaaccgctcatgatattatc 125  Q
    ||||||||||| ||||||||||||||||||| |  | ||  ||  ||||||||   ||| |||||| || | | | ||||||||||||||||| ||  ||    
T  17598864 tacaaaaatgatcccaacactttaattgctaatatgcaagacctttggcatattcgagtacatcatctgtcgagtttatgtaaccgctcatgacatcgtc 17598963  T
Q  126 acttttgaaagctttcctacaaaacaattgaagggcattattatgatccaagggtcgaactttgtaaacttcatctgctccatgctctcccaagatatgg 225  Q
    | |||| ||||||||||||||||||||||||||||||| ||||||||  | | ||||||||||||||||||||||| ||||||||||||  |||||||||    
T  17598964 aatttttaaagctttcctacaaaacaattgaagggcatcattatgatttatgagtcgaactttgtaaacttcatctactccatgctctctgaagatatgg 17599063  T
Q  226 ccatttcttgaaattaaaatgattctactccctgtgcct----agacactctcgtgtcatggccaaattatccagttgttcaactttatcaacgttatca 321  Q
    | || ||| || ||||  ||||||||||| | |||||||    || || |||| | |||||||||| || |||||||||||||||| || ||| ||||||    
T  17599064 ctatctctagatattacgatgattctacttcttgtgcctagccagccattctcatttcatggccaatttttccagttgttcaacttgatgaacattatca 17599163  T
Q  322 agaac 326  Q
    |||||    
T  17599164 agaac 17599168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 8275 - 8333
Alignment:
Q  4 ttccattcagatacatctcgaccatacaaaaatgagcccaacactttaattgctagtgg 62  Q
    ||||||||||  ||||  |||||| |||||||||||||||| ||| |||||||||||||    
T  8275 ttccattcagtcacattacgaccagacaaaaatgagcccaatactgtaattgctagtgg 8333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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