View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19055_high_10 (Length: 345)

Name: NF19055_high_10
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19055_high_10
NF19055_high_10
[»] chr1 (1 HSPs)
chr1 (16-345)||(47964944-47965253)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 47964944 - 47965253
Alignment:
Q  16 atgtatccaaagttgcaaagtgaataataacttttgcaggagaaacagggaaatgtttaaaattattagatttttcgtgttaaagtttttactatttatg 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47964944 atgtatccaaagttgaaaagtgaataataacttttgcaggagaaacagggaaatgtttaaaattattagatttttcgtgttaaagtttttactatttatg 47965043  T
Q  116 tttctatttgttctaaatgtatatgcgttgttttaaattgaaattcaataaaaatatattactgtttgtcacacacatcaccacctttagaattgatggt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        
T  47965044 tttctatttgttctaaatgtatatgcgttgttttaaattgaaattcaataaaaatatattaatgtttgtcacacacatcaccacctttagaattga---- 47965139  T
Q  216 atggaagaaggttttctctcatataattgttggaacaccggtgtctagggatcatcatcaagctgagttttgagaacaacataagcagaattcgacatca 315  Q
                    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47965140 ----------------tctcatgtaattgttggaacaccggtgtctcgggatcatcatcaagctgagttttgagaacaacataaccagaattcgacatca 47965223  T
Q  316 cttgtcggctgataacaaattgcaagagtc 345  Q
    ||||||||||||||||||||||||||||||    
T  47965224 cttgtcggctgataacaaattgcaagagtc 47965253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University