View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19055_high_17 (Length: 254)
Name: NF19055_high_17
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_high_17 |
 |  |
|
| [»] scaffold0648 (1 HSPs) |
 |  |  |
|
| [»] scaffold0274 (1 HSPs) |
 |  |  |
|
| [»] scaffold0640 (2 HSPs) |
 |  |  |
|
| [»] scaffold2156 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 49)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 19436098 - 19436199
Alignment:
| Q |
46 |
cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca |
145 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
19436098 |
cttctacttttatctataacaacattccacaaaaccatgtgcagcaatcacacagtggttcgatgcaatgagaaagatcaagagacactgttaaccttca |
19436197 |
T |
 |
| Q |
146 |
aa |
147 |
Q |
| |
|
|| |
|
|
| T |
19436198 |
aa |
19436199 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 17940962 - 17941063
Alignment:
| Q |
46 |
cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca |
145 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||| |
|
|
| T |
17940962 |
cttctacttttatttataaccacattccacaaaaccatgtgcagcaatcacacagttgttcaatgcaatgagaaagatcgcgagacactattaaccttca |
17941061 |
T |
 |
| Q |
146 |
aa |
147 |
Q |
| |
|
|| |
|
|
| T |
17941062 |
aa |
17941063 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 14897163 - 14897068
Alignment:
| Q |
52 |
cttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa |
147 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
14897163 |
cttttatctataactacattccacaaaaccatgtgcagcaaccacaccgtggttcaatgcaatgagaaagatcgtgagatattgttaaacttcaaa |
14897068 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 18102660 - 18102761
Alignment:
| Q |
46 |
cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca |
145 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
18102660 |
cttctacttttatcggtaaccacattccacaaaagcatgtgcaccaatcacacagtggttcgatgcaatgagaaagatcatgagacactgttaaccttca |
18102759 |
T |
 |
| Q |
146 |
aa |
147 |
Q |
| |
|
|| |
|
|
| T |
18102760 |
aa |
18102761 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 19350631 - 19350724
Alignment:
| Q |
50 |
tacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaacctt |
143 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
19350631 |
tacttttatctataaccacattccacaaaaccatgtgcaccaatcacacattggttcaatgcaatgagaaagatagagagacattgttaacctt |
19350724 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 19374895 - 19374992
Alignment:
| Q |
50 |
tacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa |
147 |
Q |
| |
|
||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
19374895 |
tacttttatctataaccacattccacaaaacggtgtgcagcaatcacacattggttcgatgcaatgagaaagatcgagagacactattaaccttcaaa |
19374992 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 19414337 - 19414442
Alignment:
| Q |
145 |
aaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttcat |
244 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||| |||||| ||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
19414337 |
aaatttatatttttccaaactctctagtttaaatcatctagacttgagtaattcaagttttgttttccaatttgatttggattgggttcccccttttcaa |
19414436 |
T |
 |
| Q |
245 |
ctctct |
250 |
Q |
| |
|
|||||| |
|
|
| T |
19414437 |
ctctct |
19414442 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 18116115 - 18116222
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||| || |||||||| |||||||| |||| |||||||| ||||||||||||| ||| |
|
|
| T |
18116115 |
ttcaaatttacatttttccaaactctctagtttagatcatctagacttgcgtaattcagattttgtaatccagattgatttggattgggttcctcccttt |
18116214 |
T |
 |
| Q |
242 |
catctctc |
249 |
Q |
| |
|
|| ||||| |
|
|
| T |
18116215 |
caactctc |
18116222 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 19460733 - 19460831
Alignment:
| Q |
50 |
tacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaat |
148 |
Q |
| |
|
||||||||||| |||| |||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
19460733 |
tacttttatctataaccacattctacaaaagcttgtgcagcaatcacacagtggttggatgcaatgagaaagatcgagagacactcttaaccttcaaat |
19460831 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 18016184 - 18016273
Alignment:
| Q |
154 |
tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttca |
243 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||| |||||||||||||||||| |||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
18016184 |
tttttccaaactctctagtttaaatcatttagacttgagtaattcaaattttgaattccaatttgatttggattgggttcctccttttca |
18016273 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 18022075 - 18022168
Alignment:
| Q |
46 |
cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaa |
139 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
18022075 |
cttctacttttatcaataaccacattccacaaaaccatgtgcagcaattacacagtggtgcaatgcaatgaaaaagatcgagagacactcttaa |
18022168 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 19398945 - 19399042
Alignment:
| Q |
50 |
tacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa |
147 |
Q |
| |
|
||||||||||| |||| | |||||||||||||||||| | |||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
19398945 |
tacttttatctataactatattccacaaaaccatgtgtaccaatcacacagttgttcgatgcaatgagaaagatcgagagacactgttaaacttcaaa |
19399042 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 19399858 - 19399967
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |
|
|
| T |
19399858 |
ttcaaatttacttttttccaaactctctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctcctttt |
19399957 |
T |
 |
| Q |
242 |
catctctctc |
251 |
Q |
| |
|
|| ||||||| |
|
|
| T |
19399958 |
caactctctc |
19399967 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 19464506 - 19464615
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| || ||||| ||||||||||||||||||| | ||| |||||||| ||||||||||||||||| |
|
|
| T |
19464506 |
ttcaaatttaactttttccaaactctctagtttacattatttagacttgagtaattcaaattttgtctcccaaattgatttggattgggttcctcctttt |
19464605 |
T |
 |
| Q |
242 |
catctctctc |
251 |
Q |
| |
|
|| ||||||| |
|
|
| T |
19464606 |
caactctctc |
19464615 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 19351555 - 19351651
Alignment:
| Q |
154 |
tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttcatctctct |
250 |
Q |
| |
|
|||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
19351555 |
tttttccaaactctctagtttagaatggctagacttgagtaattcaaattttgtattccaatttgatttggattgggttcctccttttcaactctct |
19351651 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 19375784 - 19375880
Alignment:
| Q |
154 |
tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttcatctctct |
250 |
Q |
| |
|
|||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
19375784 |
tttttccaaactctctagtttagattcactagacttgagtaattcaaattttgtattccaatttgatttggattgggttcctccttttcaactctct |
19375880 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 19413396 - 19413496
Alignment:
| Q |
46 |
cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca |
145 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||||||||||| ||||| |||||| |||| |||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
19413396 |
cttctacttttatcaataaccatattccacaaaaccatgtgcaacaatcccacagttgttcgatgcaatgagaatgatcgagagacactgttaaccttca |
19413495 |
T |
 |
| Q |
146 |
a |
146 |
Q |
| |
|
| |
|
|
| T |
19413496 |
a |
19413496 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 18108589 - 18108695
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
18108589 |
ttcaaatttacatttttccaatctctctactttattttcactagacttgagtaattcaaattttgtattccagtttgatttggattgggttcctcctttt |
18108688 |
T |
 |
| Q |
242 |
catctct |
248 |
Q |
| |
|
|| |||| |
|
|
| T |
18108689 |
caactct |
18108695 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 19333199 - 19333293
Alignment:
| Q |
51 |
acttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca |
145 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
19333199 |
acttttatctataactacattccacaaaaccatgtgtagcaatcacacagttgttcgctgcaatgagaaagatcgagagacattgttaacgttca |
19333293 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 17942104 - 17942205
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| || |||||| |||||||||||| |||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
17942104 |
ttcaaatttaacttttttcaaactctctagtttagactcactagacttgagtaattcaagttttgtattccaatttgatttggattgggttcctcctttt |
17942203 |
T |
 |
| Q |
242 |
ca |
243 |
Q |
| |
|
|| |
|
|
| T |
17942204 |
ca |
17942205 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 17949982 - 17950083
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
|||||||||||||||||||||| | | ||||||| | | |||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
17949982 |
ttcaaatttacatttttccaaattatttagtttagatgaactagacttgagtaattcaaattttgtaatccaatttgatttggattgggttcctcctttt |
17950081 |
T |
 |
| Q |
242 |
ca |
243 |
Q |
| |
|
|| |
|
|
| T |
17950082 |
ca |
17950083 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 18103496 - 18103605
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| | | |||||| ||||||| ||||||||||||||||| |||||| || ||||||| ||||||||| |
|
|
| T |
18103496 |
ttcaaatttgcatttttccaaactctgtagtttagatgaactagacttgagtaactcaaattttgtattccaatttgatatggattgggtacctcctttt |
18103595 |
T |
 |
| Q |
242 |
catctctctc |
251 |
Q |
| |
|
|| ||||||| |
|
|
| T |
18103596 |
caactctctc |
18103605 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 18107662 - 18107747
Alignment:
| Q |
62 |
taacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa |
147 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
18107662 |
taaccacattccacaaatgcatgtgcagcaatcacacagtggttcgatgcaatgagaaagatctagatatactcttaaccttcaaa |
18107747 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 18115166 - 18115263
Alignment:
| Q |
50 |
tacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa |
147 |
Q |
| |
|
||||||||||| |||| |||||| |||||| | |||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
18115166 |
tacttttatctataaccacattctacaaaagctcgtgcagcaatcacacagtggttggatgcaatgagaaagatcgagagacactcttaaccttcaaa |
18115263 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 18146024 - 18146149
Alignment:
| Q |
22 |
attctcacttcacaaatatcacttcttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaag |
121 |
Q |
| |
|
||||| ||||||||||||||| ||||| | ||| ||| | |||| ||||||||||||| ||||||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
18146024 |
attcttacttcacaaatatcatttcttttgcttatatttataaccacattccacaaaagcatgtgcagcaatcacacaatttttcgatgcaatgagaaag |
18146123 |
T |
 |
| Q |
122 |
atcgagagatactgttaaccttcaaa |
147 |
Q |
| |
|
||| |||| ||||| |||||||||| |
|
|
| T |
18146124 |
atcatgagacactgtcaaccttcaaa |
18146149 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 251
Target Start/End: Original strand, 19381055 - 19381152
Alignment:
| Q |
154 |
tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttcatctctctc |
251 |
Q |
| |
|
|||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
19381055 |
tttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcaactctctc |
19381152 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 19424849 - 19424938
Alignment:
| Q |
154 |
tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttca |
243 |
Q |
| |
|
|||||||||||||||||||||| | | |||||| |||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
19424849 |
tttttccaaactctctagtttagaagaactagacttgagtaattcaacttttgtattccaatttgatttggattgggttcctccttttca |
19424938 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 24494200 - 24494099
Alignment:
| Q |
46 |
cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca |
145 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| | |||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
24494200 |
cttctacttttatccataaccacattccacaagagcatgtgcagccatcacacattggtttcatgcaatgagaaagatcgagagacactgttagccttca |
24494101 |
T |
 |
| Q |
146 |
aa |
147 |
Q |
| |
|
|| |
|
|
| T |
24494100 |
aa |
24494099 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 19392357 - 19392456
Alignment:
| Q |
48 |
tctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa |
147 |
Q |
| |
|
||||||||||| | ||| ||||| |||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19392357 |
tctacttttatttataatcacattatacaaaagcatgtgcatcaatcacaccgtggttcaatgtaatgagaaagatcgagagacactgttaaccttcaaa |
19392456 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 14896240 - 14896131
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
14896240 |
ttcaaatttaactttttccaaacactctagtttagtttcactagacatgagtaattcaaatgttgcattccaatttgatttggattgggttcctcctttt |
14896141 |
T |
 |
| Q |
242 |
catctctctc |
251 |
Q |
| |
|
|| ||||||| |
|
|
| T |
14896140 |
caactctctc |
14896131 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 18165306 - 18165407
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
|||||||||||||||| |||||||||| | |||| | |||||| ||||||||||||||||||||||||| |||| |||| ||||||||||||||||| |
|
|
| T |
18165306 |
ttcaaatttacattttgccaaactctccaatttagattcactagacttgagtaattcaaattttgtattccaatttgctttggattgggttcctcctttt |
18165405 |
T |
 |
| Q |
242 |
ca |
243 |
Q |
| |
|
|| |
|
|
| T |
18165406 |
ca |
18165407 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 19393299 - 19393408
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| || |||||||||||| ||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
19393299 |
ttcaaatttacatttttccaaactccatagtttagtttcactaaacttgagtaattcaatttttgaattccaatttgatttgaattgggttcctcctttt |
19393398 |
T |
 |
| Q |
242 |
catctctctc |
251 |
Q |
| |
|
|| ||||||| |
|
|
| T |
19393399 |
caactctctc |
19393408 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 25462271 - 25462372
Alignment:
| Q |
46 |
cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca |
145 |
Q |
| |
|
||||||||||| || |||| || |||||||||| |||||||| ||||||||| ||||||| ||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
25462271 |
cttctacttttttcaataaccacgttccacaaaagcatgtgcaacaatcacactgtggttcgatgcaatgagaaagaccgtgagacactgttaaccttca |
25462370 |
T |
 |
| Q |
146 |
aa |
147 |
Q |
| |
|
|| |
|
|
| T |
25462371 |
aa |
25462372 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 17727387 - 17727279
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | ||| | |||||||||||||||||| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
17727387 |
ttcaaatttaactttttccaaactctctagtttagattcactacaattgagtaattcaaattttgcattccaatttgatttggattgggttcctcctttt |
17727288 |
T |
 |
| Q |
242 |
catctctct |
250 |
Q |
| |
|
|| |||||| |
|
|
| T |
17727287 |
caactctct |
17727279 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 19028616 - 19028508
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | ||| | |||||||||||||||||| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
19028616 |
ttcaaatttaactttttccaaactctctagtttagattcactacaattgagtaattcaaattttgcattccaatttgatttggattgggttcctcctttt |
19028517 |
T |
 |
| Q |
242 |
catctctct |
250 |
Q |
| |
|
|| |||||| |
|
|
| T |
19028516 |
caactctct |
19028508 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 18015267 - 18015340
Alignment:
| Q |
46 |
cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaa |
119 |
Q |
| |
|
||||| ||||||||| |||| |||||||||| |||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
18015267 |
cttctccttttatctataaccacattccacataaccatgtgcagcaatcacacattggttcgatgcaatgagaa |
18015340 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 18146992 - 18147081
Alignment:
| Q |
154 |
tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttca |
243 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
18146992 |
tttttccaacctctctagtttagattcactagacatgagtaattcaagttttgtattccaatttgatttggattgggttccaccttttca |
18147081 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #38
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 19380115 - 19380196
Alignment:
| Q |
62 |
taacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaacctt |
143 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
19380115 |
taaccacattccacaaatgcatatgcagcaatcacacagtggttcgatgtaatgagaaagatctagagatactcttaacctt |
19380196 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #39
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 18143467 - 18143600
Alignment:
| Q |
18 |
gaccattctcacttcacaaatatcacttcttct------acttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgc |
111 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| | |||| |||| |||| ||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
18143467 |
gaccattcttacttcacaaatgtcacttcttttgcttatacttctatcaataaccacattccacaaaaccatgtgcagcaatcacaca---gttcgatgc |
18143563 |
T |
 |
| Q |
112 |
aatgagaaagatcgagagatactgttaaccttcaaat |
148 |
Q |
| |
|
|| ||||||||| |||||| | |||||| |||||||| |
|
|
| T |
18143564 |
aacgagaaagattgagagacattgttaagcttcaaat |
18143600 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #40
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 19419189 - 19419290
Alignment:
| Q |
46 |
cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca |
145 |
Q |
| |
|
|||||| |||| ||| |||| ||||||| || | ||||||||| |||||||| |||||| ||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
19419189 |
cttctatttttttctataaccacattccgcatatgcatgtgcagatatcacacaatggttcgatgcaatgagaaagatctagagatactcttaaccttca |
19419288 |
T |
 |
| Q |
146 |
aa |
147 |
Q |
| |
|
|| |
|
|
| T |
19419289 |
aa |
19419290 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #41
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 251
Target Start/End: Original strand, 19437120 - 19437217
Alignment:
| Q |
154 |
tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttcatctctctc |
251 |
Q |
| |
|
|||||||||||||||||||||| | || ||| |||| |||||||||||||||||| | |||||| || ||||||||||||||||||| ||||||| |
|
|
| T |
19437120 |
tttttccaaactctctagtttagattggctcgacttgagcaattcaaattttgtattcaaatttgatatggattgggttcctccttttcaactctctc |
19437217 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #42
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 25463240 - 25463309
Alignment:
| Q |
182 |
ctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttcatctctctc |
251 |
Q |
| |
|
|||||| |||||||||||| ||||||||| || ||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
25463240 |
ctagacttgagtaattcaacttttgtattacaatttgatttggattgggttcctccttttcaactctctc |
25463309 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #43
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 18015339 - 18015395
Alignment:
| Q |
91 |
aatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa |
147 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18015339 |
aatcacacattggttcgatgcaatgagaaagatcgagagacactgttaaccttcaaa |
18015395 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #44
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 18144340 - 18144440
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| | ||||| |||||| |||||||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
18144340 |
ttcaaatttacatttttccaaactctctagtttagttgtactatagatgaggaattcacgttttgtattccaatttgatttggattaggttcctcctttt |
18144439 |
T |
 |
| Q |
242 |
c |
242 |
Q |
| |
|
| |
|
|
| T |
18144440 |
c |
18144440 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #45
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 19354062 - 19354154
Alignment:
| Q |
47 |
ttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaacctt |
143 |
Q |
| |
|
||||| |||||||| |||| |||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
19354062 |
ttctatttttatctataaccacattccacaaa----tgtgcaacaatcacactatggttcgatgcaatgagaaagatcgagagacattgttaacctt |
19354154 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #46
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 19334199 - 19334265
Alignment:
| Q |
182 |
ctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttcatctct |
248 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
19334199 |
ctagacatgagttattcaaatattgtattccaatttgatttggattggattcctccttttcaactct |
19334265 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 17728437 - 17728382
Alignment:
| Q |
92 |
atcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa |
147 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| |||| ||||||||| |||||| |
|
|
| T |
17728437 |
atcacacattggttcgatgcaatgagaaagatcttgagacactgttaactttcaaa |
17728382 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 19029666 - 19029611
Alignment:
| Q |
92 |
atcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa |
147 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| |||| ||||||||| |||||| |
|
|
| T |
19029666 |
atcacacattggttcgatgcaatgagaaagatcttgagacactgttaactttcaaa |
19029611 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 172
Target Start/End: Original strand, 19461682 - 19461712
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagt |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
19461682 |
ttcaaatttacatttttccaaactctctagt |
19461712 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 13667655 - 13667582
Alignment:
| Q |
74 |
acaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa |
147 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
13667655 |
acaaaaccatgtgcaacaatcacacattggttcaatgcaatgagaaagatcgagagacactcttaaccttcaaa |
13667582 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 13666800 - 13666692
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||| || ||| | ||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
13666800 |
ttcaaatttaactttttctaaactctctagtttagacacactatgcttgagtaattcaaagcttgtattccaatttgatttggattgggttcctcctttt |
13666701 |
T |
 |
| Q |
242 |
catctctct |
250 |
Q |
| |
|
| |||||| |
|
|
| T |
13666700 |
taactctct |
13666692 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 15531547 - 15531682
Alignment:
| Q |
18 |
gaccattctcacttcacaaatatcacttct------tctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgc |
111 |
Q |
| |
|
||||||||| ||||||||||| |||||||| | ||||||||| | | || ||||||||||||| |||||||| |||| ||||| | |||||||| |
|
|
| T |
15531547 |
gaccattcttacttcacaaatgtcacttctattggttttacttttatgtattaccacattccacaaaagcatgtgcaccaataacacatttgttcaatgt |
15531646 |
T |
 |
| Q |
112 |
aatgagaaagatcgagagatactgttaaccttcaaa |
147 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15531647 |
aatgagaaagatcgagagacactgttaaccttcaaa |
15531682 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 2710426 - 2710319
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | |||||| |||||| ||||| || ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2710426 |
ttcaaatttaactttttccaaactctctagtttagattcactagacgtgagtagttcaacttgtgtattccaatttgatttgaattgggttcctcctttt |
2710327 |
T |
 |
| Q |
242 |
catctctc |
249 |
Q |
| |
|
|| ||||| |
|
|
| T |
2710326 |
caactctc |
2710319 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 15535695 - 15535784
Alignment:
| Q |
154 |
tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttca |
243 |
Q |
| |
|
|||||||||||||||| ||||| | |||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
15535695 |
tttttccaaactctctggtttagattcactagacttgagtaattcaaattttgtattccaattttatttggattgggttcctccttttca |
15535784 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 3953 - 3853
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | | ||| || |||||||||||||| ||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
3953 |
ttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaatattgtattccgatttgatttggattgggttcctcctttt |
3854 |
T |
 |
| Q |
242 |
c |
242 |
Q |
| |
|
| |
|
|
| T |
3853 |
c |
3853 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 3423 - 3323
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | | ||| || |||||||||||||| ||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
3423 |
ttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaatattgtattccgatttgatttggattgggttcctcctttt |
3324 |
T |
 |
| Q |
242 |
c |
242 |
Q |
| |
|
| |
|
|
| T |
3323 |
c |
3323 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 5553 - 5653
Alignment:
| Q |
142 |
ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt |
241 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | | ||| || |||||||||||||| ||||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
5553 |
ttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaatattgtatttcgatttgatttggattgggttcctcctttt |
5652 |
T |
 |
| Q |
242 |
c |
242 |
Q |
| |
|
| |
|
|
| T |
5653 |
c |
5653 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 4618 - 4719
Alignment:
| Q |
46 |
cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca |
145 |
Q |
| |
|
||||||||||||| | |||| ||||| ||||||| || |||| ||||||||| |||||| |||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
4618 |
cttctacttttatatgtaaccacatttcacaaaatcacttgcaccaatcacactgtggttagatgcaatgagaaagatcgtgagacattgttaaccttca |
4717 |
T |
 |
| Q |
146 |
aa |
147 |
Q |
| |
|
|| |
|
|
| T |
4718 |
aa |
4719 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2156 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold2156
Description:
Target: scaffold2156; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 714 - 611
Alignment:
| Q |
44 |
ttcttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaacctt |
143 |
Q |
| |
|
||||||||||||||| | |||| ||||| ||||||| || |||| ||||||||| |||||| |||||||||||||||||| |||| | |||||||||| |
|
|
| T |
714 |
ttcttctacttttatatgtaaccacatttcacaaaatcacttgcaccaatcacactgtggttagatgcaatgagaaagatcgtgagacattgttaacctt |
615 |
T |
 |
| Q |
144 |
caaa |
147 |
Q |
| |
|
|||| |
|
|
| T |
614 |
caaa |
611 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 8458703 - 8458804
Alignment:
| Q |
46 |
cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca |
145 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||| |||||||||||| |||||| || || |||||||||||| || ||| | | | |||||||||||| |
|
|
| T |
8458703 |
cttctactgttatctgtaaccacattccacaaaagcatgtgcagcaaccacacattgttttcatgcaatgagaatgaccgacaaacaatgttaaccttca |
8458802 |
T |
 |
| Q |
146 |
aa |
147 |
Q |
| |
|
|| |
|
|
| T |
8458803 |
aa |
8458804 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University