View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19055_high_19 (Length: 246)
Name: NF19055_high_19
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 47965277 - 47965342
Alignment:
| Q |
164 |
tatgcaaaaatatcgtcgatgttcaatttttggcgtaggaatagcgtacaatttcgtcgctgtttc |
229 |
Q |
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| T |
47965277 |
tatgcaaacatatcgtcaatgttcaatttttggcgtaggaatagcgtacaatttcgtcgctgtttc |
47965342 |
T |
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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47965231 - 47965278
Alignment:
| Q |
1 |
gctgataacaaattgcaagagtctaaacaaaacaccttaccctctcta |
48 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47965231 |
gctgataacaaattgcaagagtctaaacaaaacacctcaccctctcta |
47965278 |
T |
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