View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19055_high_20 (Length: 244)
Name: NF19055_high_20
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_high_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 65 - 244
Target Start/End: Original strand, 1792234 - 1792409
Alignment:
| Q |
65 |
ctcaaaaaatcgtcttaacaagcttctttcctttgaccaccaatcatctttgcctttaaaagtaagtactcaagtctttacaatcccacatctctctaag |
164 |
Q |
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| T |
1792234 |
ctcaaaaaattgtcttaacaagcttctttcctttgaccaccaatcatctttgcctttaaaagt----actcaagtctctacaatcccacatctctctaag |
1792329 |
T |
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| Q |
165 |
tacgcttctcattaccattttcgtgaaaaccaaacatattgatgttgaagaatattgaaaagcacttccccaaattgacc |
244 |
Q |
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| T |
1792330 |
tacgcttctcattaccattttcgtgaaaaccaaacatattgatgttgaagaatattgaaaagcacttccctaaattgacc |
1792409 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 1791787 - 1791842
Alignment:
| Q |
18 |
tctatttcatatatgcaattttcttaaagattgaaaatgagttttcactcaaaaaa |
73 |
Q |
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| T |
1791787 |
tctatttcatatatgcagttttcttaaagattgaaaatgagttttcactcaaaaaa |
1791842 |
T |
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