View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19055_high_3 (Length: 630)
Name: NF19055_high_3
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 573
Target Start/End: Original strand, 32113676 - 32114232
Alignment:
| Q |
19 |
taaagcacacatctcatttgtcaagaatattactatgaatgcttgcaatgaacttaaaggtaacatcataaagttggttagaatgaannnnnnnnattaa |
118 |
Q |
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| T |
32113676 |
taaagcacacatctcatttgtcaagaatattactatgaatgcttgcaatgaacttaaaggtaacatcataaagttggttagaatgaattttttttattaa |
32113775 |
T |
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| Q |
119 |
tctttggcctcaagataactttttatttggtacttttgattatgtaggttttaatttattaaactataaggatcctaacagtgccacaagtttgtatggg |
218 |
Q |
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| T |
32113776 |
tctttgggctcaagataactttttatttggtacttttgattatgtaggttttgatttattaaactataaggatcctaacagtgccacaagtttgtatggg |
32113875 |
T |
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| Q |
219 |
agaatgtatatgccacttctttcaacactaatgactatggccttcattgtcacctttggtgtgtgacagtcttctaagccttctgcaaatggattatgga |
318 |
Q |
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| T |
32113876 |
agaatgtatatgccacttctttcaacactaatgactatggccttcattgtcacctttggtgtgtgacagtcttctaagccttctgcaaatggattatgga |
32113975 |
T |
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| Q |
319 |
gacaaaggatgagatggcagaaatgttataatta-ttttttgcatggccatgtatttagttagatgtccttgttgattgcataaatnnnnnnntgtatgt |
417 |
Q |
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| T |
32113976 |
gacaaaggatgagatggcagaaatgttttaattatttttttgcatggccatgtatttagttagatgtccttgttgattgcataaataaataaatgtatgt |
32114075 |
T |
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| Q |
418 |
ttatgatgattccatatgtattcacgcaaataaataagcagcagtgctgtggtaatttgtttttactattctgctcaacgttttg-nnnnnnnnnnnnnn |
516 |
Q |
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| T |
32114076 |
ttatgatgattccatatgtattcacgcaaataaataagcagcaatgctgtggtaatttgtttttactattctgctcaacgttttgaaaaaagaaaaaaaa |
32114175 |
T |
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| Q |
517 |
nntggtattaaccctcctatttccggagatttgaactctaattctctcaaacgatac |
573 |
Q |
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| T |
32114176 |
aatggtattaaccctcctatttccagagatttgaactctaattctctcaaacgatac |
32114232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 621
Target Start/End: Original strand, 32114368 - 32114417
Alignment:
| Q |
569 |
gataccactaccaaagttgttcaagcttttaacttgtactttttccttcatct |
621 |
Q |
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| T |
32114368 |
gataccactaccaaagtt---caagcttttaacttaaactttttccttcatct |
32114417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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