View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19055_low_1 (Length: 807)
Name: NF19055_low_1
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 724; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 724; E-Value: 0
Query Start/End: Original strand, 11 - 791
Target Start/End: Complemental strand, 40198948 - 40198162
Alignment:
| Q |
11 |
atcatcaagctatttgtaggaaaatgtgtgtattggctgcacatatcacgctctctatattgatctatattacttcatatatttatctgtattgcaaaag |
110 |
Q |
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| T |
40198948 |
atcatcaagctatttgtaggaaaatgtgtgtattggctgcacatatcacgctctctatattgatctatattacttcatatatttaactgtattgcaaaag |
40198849 |
T |
|
| Q |
111 |
attgagtttaattattttgtttagtcttttccatatactcacatgctccta------attaaattgattatttaaggagttccttgctgcacaaattagt |
204 |
Q |
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| T |
40198848 |
attgagtttaattattttgtttagtcttttccatatactcacatgctcctagtcctaattaaattgattatttaaggagttccttgctgcacaaattagt |
40198749 |
T |
|
| Q |
205 |
tatctatccgactgtaatagcacaactgaatatgataatttcgtttcatatgagataccacattgtggtaaatacaattgaaaaaacttgtccaaaacca |
304 |
Q |
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| T |
40198748 |
tatctatccgactgtaatagcacaactgaatatgataatttcgtttcatatgagataccacattgtggtaaatacaattgaaaaaacttgtccaaaacca |
40198649 |
T |
|
| Q |
305 |
aaagctgtacattaaccacttgagagtcgaatctattggagctaggccatataaagtatgaaaccttaacattccataggcttaatgtataagaacaaac |
404 |
Q |
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| T |
40198648 |
aaagctgtgcattaaccacttgagaatcgaatatattggagctaggccatataaagtatgaaaccttaacattccataggcttaatgtatacgaacaaac |
40198549 |
T |
|
| Q |
405 |
accgcaaagtataaaccatataaaagcataccttgacttcattgatgtcaacattgacaatttgtaataggcggtcatcaatcatgtggtctacctaaga |
504 |
Q |
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| T |
40198548 |
acagcaaagtataaaccatctaaaagcataccttgacttcattgatgtcaacattgacaatttgtaataggcggtcatcaatcatgtggtctacctaaga |
40198449 |
T |
|
| Q |
505 |
agccatattaagtacagtcagcatagcaatatcaattgagaaataaaacttgaatagataatgattacctgtgagcgaagaagttccttgtatgtagtga |
604 |
Q |
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| T |
40198448 |
agccatattaagtacagtcagcatagcaatatcaattgagaaataaaagttcaatagataatgattacctgtgagcgaagaagttccttgtatgtagtga |
40198349 |
T |
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| Q |
605 |
tttctctcaaagcaatggtaaatttgttcattacaggtcctgggagtagtgaaaacaaaatatattaaaatgaagagaaaagataatgtttaattaaacg |
704 |
Q |
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| T |
40198348 |
tttctctcaaagcaatggtaaatttgttcattacaggtcctgggagtagtgaaaacaaaatatattaaaatgaagagaaaggataatgtttaattaaacg |
40198249 |
T |
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| Q |
705 |
gattatatggcttacctcccaatgcaacgaaatgaggatcagtatggcctcctccaaaactatcaagggaacttataaatgcaatgt |
791 |
Q |
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| T |
40198248 |
gattatatggcttacctcccaatgcaacgaaatgaggatcagtatggcctcctccaaaactatcaagggaacttataaatgcaatgt |
40198162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 568 - 647
Target Start/End: Complemental strand, 45083984 - 45083905
Alignment:
| Q |
568 |
attacctgtgagcgaagaagttccttgtatgtagtgatttctctcaaagcaatggtaaatttgttcattacaggtcctgg |
647 |
Q |
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||||||||||| |||||||||||||||| |||| ||||||||||||||||||| | |||||| ||||||||||||||| |
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| T |
45083984 |
attacctgtgaacgaagaagttccttgtgtgtactgatttctctcaaagcaatagagaatttggccattacaggtcctgg |
45083905 |
T |
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