View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19055_low_10 (Length: 345)

Name: NF19055_low_10
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19055_low_10
NF19055_low_10
[»] chr1 (1 HSPs)
chr1 (16-345)||(47964944-47965253)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 47964944 - 47965253
Alignment:
Q  16 atgtatccaaagttgcaaagtgaataataacttttgcaggagaaacagggaaatgtttaaaattattagatttttcgtgttaaagtttttactatttatg 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47964944 atgtatccaaagttgaaaagtgaataataacttttgcaggagaaacagggaaatgtttaaaattattagatttttcgtgttaaagtttttactatttatg 47965043  T
Q  116 tttctatttgttctaaatgtatatgcgttgttttaaattgaaattcaataaaaatatattactgtttgtcacacacatcaccacctttagaattgatggt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        
T  47965044 tttctatttgttctaaatgtatatgcgttgttttaaattgaaattcaataaaaatatattaatgtttgtcacacacatcaccacctttagaattga---- 47965139  T
Q  216 atggaagaaggttttctctcatataattgttggaacaccggtgtctagggatcatcatcaagctgagttttgagaacaacataagcagaattcgacatca 315  Q
                    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47965140 ----------------tctcatgtaattgttggaacaccggtgtctcgggatcatcatcaagctgagttttgagaacaacataaccagaattcgacatca 47965223  T
Q  316 cttgtcggctgataacaaattgcaagagtc 345  Q
    ||||||||||||||||||||||||||||||    
T  47965224 cttgtcggctgataacaaattgcaagagtc 47965253  T

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