View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19055_low_11 (Length: 329)
Name: NF19055_low_11
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_low_11 |
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| [»] chr2 (4 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 42189437 - 42189265
Alignment:
| Q |
157 |
actatcattatcaatgtctaagttgaatctctaccacatacctttttattgtcttcaatgtaagatctaataaggaagcggtcatacttctctttatctt |
256 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| |
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| T |
42189437 |
actatcattatcaatgtctaagttgaatctctacgacatacctttttattgtcttcaatgtaagatctaataaggtaacggtcatacttctgtttatctt |
42189338 |
T |
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| Q |
257 |
tagcagatgctaaaagattaatcatatcttgatcaacagcagcaccacaagagggatcaggacatctcagcat |
329 |
Q |
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| T |
42189337 |
cagcagatgctaaaagattaatcatatcttgatcaacagcagcaccacaagcaggatcaggacatctcagcat |
42189265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 42189660 - 42189588
Alignment:
| Q |
21 |
aaatagcaatgactaaaataaaagagagttggacaacaacaagtgatactaatgaaccacacatcacacaatt |
93 |
Q |
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| T |
42189660 |
aaatagcaatgactaaaataaaagagggttagacaacaacaggtgatactaataaaccacacatcacacaatt |
42189588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 42189556 - 42189514
Alignment:
| Q |
90 |
aattagggcaaatgtcaacccaccaacatgcaaagaattatta |
132 |
Q |
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| T |
42189556 |
aattagggcaaatatcaacccaccaacatgcaaagaattatta |
42189514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 42189487 - 42189459
Alignment:
| Q |
132 |
agtatagattatacacagattgcacacta |
160 |
Q |
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| T |
42189487 |
agtatagattatacacagattgcacacta |
42189459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 29553284 - 29553112
Alignment:
| Q |
157 |
actatcattatcaatgtctaagttgaatctctaccacatacctttttattgtcttcaatgtaagatctaataaggaagcggtcatacttctctttatctt |
256 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||| | || ||||||||||| ||||||| |
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| T |
29553284 |
actatcattatcaatgtctaagttgaatctttacgacatacctttttattgttttcaatgtaagatctaacaagataacgatcatacttctccttatctt |
29553185 |
T |
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| Q |
257 |
tagcagatgctaaaagattaatcatatcttgatcaacagcagcaccacaagagggatcaggacatctcagcat |
329 |
Q |
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| T |
29553184 |
cagcagatgctaaaagattaattgtatcttgatcaacagcagcaccacaagcgggatcaggacatctcagcat |
29553112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 163 - 329
Target Start/End: Complemental strand, 29538157 - 29537991
Alignment:
| Q |
163 |
attatcaatgtctaagttgaatctctaccacatacctttttattgtcttcaatgtaagatctaataaggaagcggtcatacttctctttatctttagcag |
262 |
Q |
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||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| |||| | || |||||||||| |||||||| ||||| |
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| T |
29538157 |
attattaatgtctaagttgaatctctaagatatacctttttattgacttcaatgtaagatctaacaaggtaacgttcatacttctttttatcttcagcag |
29538058 |
T |
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| Q |
263 |
atgctaaaagattaatcatatcttgatcaacagcagcaccacaagagggatcaggacatctcagcat |
329 |
Q |
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|||| || || |||||||||||||||||| |||||| |||| | ||||||||||||||||||||| |
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| T |
29538057 |
atgcaaatgcatcaatcatatcttgatcaacggcagcagcacaggcgggatcaggacatctcagcat |
29537991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 29538352 - 29538315
Alignment:
| Q |
56 |
acaacaagtgatactaatgaaccacacatcacacaatt |
93 |
Q |
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| T |
29538352 |
acaacaagtgatactaatgaaccacacaccacacaatt |
29538315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 194 - 325
Target Start/End: Complemental strand, 25207633 - 25207502
Alignment:
| Q |
194 |
atacctttttattgtcttcaatgtaagatctaataaggaagcggtcatacttctctttatctttagcagatgctaaaagattaatcatatcttgatcaac |
293 |
Q |
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||||||||||||||||||| || ||||||||| |||| | ||| ||||||| |||||||||| | | ||||||| | || ||||||||||||| ||| |
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| T |
25207633 |
atacctttttattgtcttcgatataagatctacgaaggtaacgggcatacttttctttatcttcattacatgctaataaatcaatcatatcttgaccaat |
25207534 |
T |
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| Q |
294 |
agcagcaccacaagagggatcaggacatctca |
325 |
Q |
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| T |
25207533 |
agcagccccacaagtgggttcaggacatctca |
25207502 |
T |
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