View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19055_low_15 (Length: 264)

Name: NF19055_low_15
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19055_low_15
NF19055_low_15
[»] chr6 (3 HSPs)
chr6 (20-248)||(22880975-22881203)
chr6 (20-248)||(22898910-22899138)
chr6 (210-248)||(17225296-17225334)
[»] chr4 (1 HSPs)
chr4 (20-121)||(23187064-23187165)
[»] chr1 (2 HSPs)
chr1 (21-118)||(26925813-26925910)
chr1 (211-248)||(24594972-24595009)
[»] chr7 (3 HSPs)
chr7 (37-163)||(9417442-9417570)
chr7 (20-118)||(35542907-35543009)
chr7 (55-108)||(38129792-38129845)
[»] chr2 (1 HSPs)
chr2 (20-121)||(3669923-3670024)
[»] chr5 (2 HSPs)
chr5 (210-244)||(1108344-1108378)
chr5 (210-244)||(36419038-36419072)
[»] chr3 (1 HSPs)
chr3 (60-114)||(5118859-5118913)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 22881203 - 22880975
Alignment:
Q  20 catatgagaaaaacgtgaaaaaattgaaagagggtaattatataacttattgtggtatagctgtcatatgagaacaaatgagtgagttttgagcacttgt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22881203 catatgagaaaaacgtgaaaaaattgaaagagggtaattatataacttattgtggtatagctgtcatatgagaacaaatgagtgagttttgagcacttgt 22881104  T
Q  120 cacctgagaaaaatatataacgcacaaggaaaaaatattgtgaatgaaccaagctgaactaaatattgagttgtaaaaagtaaattattcaatgtatgta 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22881103 cacctgagaaaaatatataacgcacaaggaaaaaatattgtgaatgaaccaagctgaactaaatattgagttgtaaaaagtaaattattccatgtatgta 22881004  T
Q  220 tatagtcaagaacctaaactaaatatata 248  Q
    |||||||||||||||||||||||||||||    
T  22881003 tatagtcaagaacctaaactaaatatata 22880975  T

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Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 22899138 - 22898910
Alignment:
Q  20 catatgagaaaaacgtgaaaaaattgaaagagggtaattatataacttattgtggtatagctgtcatatgagaacaaatgagtgagttttgagcacttgt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22899138 catatgagaaaaacgtgaaaaaattgaaagagggtaattatataacttattgtggtatagctgtcatatgagaacaaatgagtgagttttgagcacttgt 22899039  T
Q  120 cacctgagaaaaatatataacgcacaaggaaaaaatattgtgaatgaaccaagctgaactaaatattgagttgtaaaaagtaaattattcaatgtatgta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22899038 cacctgagaaaaatatataacgcacaaggaaaaaatattgtgaatgaaccaagctgaactaaatattgagttgtaaaaagtaaattattcaatgtatgta 22898939  T
Q  220 tatagtcaagaacctaaactaaatatata 248  Q
    ||||||||||||||||||| |||||||||    
T  22898938 tatagtcaagaacctaaaccaaatatata 22898910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 17225296 - 17225334
Alignment:
Q  210 aatgtatgtatatagtcaagaacctaaactaaatatata 248  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  17225296 aatgtatgtatctagtcaagaacctaaaccaaatatata 17225334  T

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Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 23187165 - 23187064
Alignment:
Q  20 catatgagaaaaacgtgaaaaaattgaaagagggtaattatataacttattgtggtatagctgtcatatgagaacaaatgagtgagttttgagcacttgt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23187165 catatgagaaaaacgtgaaaaaattgaaagagggtaattatataacttattgtggtatagctgtcatatgagaacaaatgagtgagttttgagcacttgt 23187066  T
Q  120 ca 121  Q
    ||    
T  23187065 ca 23187064  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 26925910 - 26925813
Alignment:
Q  21 atatgagaaaaacgtgaaaaaattgaaagagggtaattatataacttattgtggtatagctgtcatatgagaacaaatgagtgagttttgagcacttg 118  Q
    |||||||||||| ||||||||||||||| |   ||||||||| ||||| |||| |||||||| || |||||||||| ||| |||||||||||||||||    
T  26925910 atatgagaaaaatgtgaaaaaattgaaataaattaattatattacttactgtgctatagctgccacatgagaacaattgattgagttttgagcacttg 26925813  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 24594972 - 24595009
Alignment:
Q  211 atgtatgtatatagtcaagaacctaaactaaatatata 248  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  24594972 atgtatgtatctagtcaagaacctaaaccaaatatata 24595009  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 163
Target Start/End: Original strand, 9417442 - 9417570
Alignment:
Q  37 aaaaaattgaaagagggtaattatataacttattgtggtatagctgtcatatgagaacaaatgagtgag-ttttgagcacttgtca---cctgagaaaaa 132  Q
    ||||| ||||||||   |||||| |||||||||||||||||||||| || |||||||||||| |||||| |||||| |||||||||   | |||||||||    
T  9417442 aaaaatttgaaagaaaataattacataacttattgtggtatagctgccacatgagaacaaatcagtgagtttttgaacacttgtcatatcttgagaaaaa 9417541  T
Q  133 tatataacgcacaaggaaaaaatattgtgaa 163  Q
     || |||  || |||||||||||||||||||    
T  9417542 aatttaa--cagaaggaaaaaatattgtgaa 9417570  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 35542907 - 35543009
Alignment:
Q  20 catatgagaaaaacgtgaaaaaattgaaagagggtaattatata----acttattgtggtatagctgtcatatgagaacaaatgagtgagttttgagcac 115  Q
    ||||||||||||| | |||||||||||||||  |||||||||||    ||||| |||| |||||||| || ||||||| || ||| |||||| |||||||    
T  35542907 catatgagaaaaaggagaaaaaattgaaagaaagtaattatatatattacttactgtgctatagctgccacatgagaaaaattgattgagttctgagcac 35543006  T
Q  116 ttg 118  Q
    |||    
T  35543007 ttg 35543009  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 38129792 - 38129845
Alignment:
Q  55 aattatataacttattgtggtatagctgtcatatgagaacaaatgagtgagttt 108  Q
    ||||||||| | || ||||||||||||| || ||||||||||||| ||||||||    
T  38129792 aattatataccatactgtggtatagctgccacatgagaacaaatgggtgagttt 38129845  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 3669923 - 3670024
Alignment:
Q  20 catatgagaaaaacgtgaaaaaattgaaagagggtaattatataacttattgtggtatagctgtcatatgagaacaaatgagtgagttttgagcacttgt 119  Q
    |||||||||||||| ||||||||||| || |  |||  | |||||||||||||| | |||||  |||||||||| |||||  |||||||||  |||||||    
T  3669923 catatgagaaaaacctgaaaaaattggaaaaatgtatatgtataacttattgtgatttagctaccatatgagaataaatggatgagttttgtccacttgt 3670022  T
Q  120 ca 121  Q
    ||    
T  3670023 ca 3670024  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 1108378 - 1108344
Alignment:
Q  210 aatgtatgtatatagtcaagaacctaaactaaata 244  Q
    ||||||||||| |||||||||||||||||||||||    
T  1108378 aatgtatgtatctagtcaagaacctaaactaaata 1108344  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 36419038 - 36419072
Alignment:
Q  210 aatgtatgtatatagtcaagaacctaaactaaata 244  Q
    ||||||||||| |||||||||||||||||||||||    
T  36419038 aatgtatgtatctagtcaagaacctaaactaaata 36419072  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 5118859 - 5118913
Alignment:
Q  60 tataacttattgtggtatagctgtcatatgagaacaaatgagtgagttttgagca 114  Q
    |||||||||||| |||| ||||| ||  |||||||||||| ||||||||||||||    
T  5118859 tataacttattgcggtaaagctgccacttgagaacaaatgggtgagttttgagca 5118913  T

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