View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19055_low_16 (Length: 263)
Name: NF19055_low_16
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 1792444 - 1792693
Alignment:
| Q |
1 |
tgcaaaaactcacaattcccataaggcatgaaactttgcaaaaaaggcatggaagcttatacaaatttgcataacacttaagtacgaaaatgataaagat |
100 |
Q |
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| T |
1792444 |
tgcaaaaactcacaattcccataaggcatgaaactttgcaaaaaaggcatggaagcttatacaaatttgcataacacttaagtacgaaaatgataaagat |
1792543 |
T |
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| Q |
101 |
atcattgaatcacacnnnnnnn-gtcttttattcttgggactttcttaatcgttgtcaaatttagaggaaaacatgggtaaacgtggcaatgacaaaacc |
199 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1792544 |
atcattgaatcacacttttttttgtcttttattcttgggactttcttaatcgttgtcaaatttagaggaaaacatgggtaaacgtggcaatgacaaaacc |
1792643 |
T |
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| Q |
200 |
cttggctcaaagaatgtgcaaaacacaaataactccttgtgcttcacccc |
249 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1792644 |
cttggttcaaagaatgtgcaaaacacaaataactccttgtgcttcacccc |
1792693 |
T |
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