View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19055_low_17 (Length: 262)
Name: NF19055_low_17
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 34 - 257
Target Start/End: Original strand, 31128273 - 31128496
Alignment:
| Q |
34 |
aaatttgttgaaattgtagcataagataaagatgcaagcctggcatttgatttagatttgcagattcaagtatcttcaattttgtttaataagtggttag |
133 |
Q |
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| T |
31128273 |
aaatttgttgaaattgtagcataagataaagatgcaagcctggcatttgatttagatttgcagattcaagtatcttcaattttgtttaataagtggttag |
31128372 |
T |
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| Q |
134 |
tggttctttgacgatgcatagttgctgtcaaattagcagtttaatttaacttcaacattgaggttagatagaattgttgcttaaacagtgttttgtgatg |
233 |
Q |
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| T |
31128373 |
tggttctttgacgatgcatagttgctgtcaaattagcagtttaatttaacttcaacattgaggttagatagaattgttgcttaaacagtgttttgtgatg |
31128472 |
T |
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| Q |
234 |
ccatttcctaatgttataaggttc |
257 |
Q |
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| T |
31128473 |
ccatttcctaatgttataaggttc |
31128496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 31122222 - 31122402
Alignment:
| Q |
32 |
taaaatttgttgaaattgtagcataagataaagatgcaagcctggcatttgatttagatttgcagattcaagtatcttcaattttgtttaataagtggtt |
131 |
Q |
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| T |
31122222 |
taaattttgttgaaattgtagtataatataac-atgtaggcctcacatatgatttagatttgtagattcaagtatcttcaattttgtttaataagcagtt |
31122320 |
T |
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| Q |
132 |
agtggttctttgacgatgcatagttgctgtcaaattagcagtttaatttaacttcaacattgaggttagatagaattgttgctt |
215 |
Q |
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| T |
31122321 |
agaggttcttcgtcgt--cataggtgctgtcaaattagcagtttaatttaacttcaatattgagcttacataaaattgttgctt |
31122402 |
T |
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