View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19055_low_18 (Length: 254)

Name: NF19055_low_18
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19055_low_18
NF19055_low_18
[»] chr3 (49 HSPs)
chr3 (46-147)||(19436098-19436199)
chr3 (46-147)||(17940962-17941063)
chr3 (52-147)||(14897068-14897163)
chr3 (46-147)||(18102660-18102761)
chr3 (50-143)||(19350631-19350724)
chr3 (50-147)||(19374895-19374992)
chr3 (145-250)||(19414337-19414442)
chr3 (142-249)||(18116115-18116222)
chr3 (50-148)||(19460733-19460831)
chr3 (154-243)||(18016184-18016273)
chr3 (46-139)||(18022075-18022168)
chr3 (50-147)||(19398945-19399042)
chr3 (142-251)||(19399858-19399967)
chr3 (142-251)||(19464506-19464615)
chr3 (154-250)||(19351555-19351651)
chr3 (154-250)||(19375784-19375880)
chr3 (46-146)||(19413396-19413496)
chr3 (142-248)||(18108589-18108695)
chr3 (51-145)||(19333199-19333293)
chr3 (142-243)||(17942104-17942205)
chr3 (142-243)||(17949982-17950083)
chr3 (142-251)||(18103496-18103605)
chr3 (62-147)||(18107662-18107747)
chr3 (50-147)||(18115166-18115263)
chr3 (22-147)||(18146024-18146149)
chr3 (154-251)||(19381055-19381152)
chr3 (154-243)||(19424849-19424938)
chr3 (46-147)||(24494099-24494200)
chr3 (48-147)||(19392357-19392456)
chr3 (142-251)||(14896131-14896240)
chr3 (142-243)||(18165306-18165407)
chr3 (142-251)||(19393299-19393408)
chr3 (46-147)||(25462271-25462372)
chr3 (142-250)||(17727279-17727387)
chr3 (142-250)||(19028508-19028616)
chr3 (46-119)||(18015267-18015340)
chr3 (154-243)||(18146992-18147081)
chr3 (62-143)||(19380115-19380196)
chr3 (18-148)||(18143467-18143600)
chr3 (46-147)||(19419189-19419290)
chr3 (154-251)||(19437120-19437217)
chr3 (182-251)||(25463240-25463309)
chr3 (91-147)||(18015339-18015395)
chr3 (142-242)||(18144340-18144440)
chr3 (47-143)||(19354062-19354154)
chr3 (182-248)||(19334199-19334265)
chr3 (92-147)||(17728382-17728437)
chr3 (92-147)||(19029611-19029666)
chr3 (142-172)||(19461682-19461712)
[»] chr6 (2 HSPs)
chr6 (74-147)||(13667582-13667655)
chr6 (142-250)||(13666692-13666800)
[»] chr4 (3 HSPs)
chr4 (18-147)||(15531547-15531682)
chr4 (142-249)||(2710319-2710426)
chr4 (154-243)||(15535695-15535784)
[»] scaffold0648 (1 HSPs)
scaffold0648 (142-242)||(3853-3953)
[»] scaffold0274 (1 HSPs)
scaffold0274 (142-242)||(3323-3423)
[»] scaffold0640 (2 HSPs)
scaffold0640 (142-242)||(5553-5653)
scaffold0640 (46-147)||(4618-4719)
[»] scaffold2156 (1 HSPs)
scaffold2156 (44-147)||(611-714)
[»] chr8 (1 HSPs)
chr8 (46-147)||(8458703-8458804)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 19436098 - 19436199
Alignment:
Q  46 cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca 145  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  19436098 cttctacttttatctataacaacattccacaaaaccatgtgcagcaatcacacagtggttcgatgcaatgagaaagatcaagagacactgttaaccttca 19436197  T
Q  146 aa 147  Q
    ||    
T  19436198 aa 19436199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 17940962 - 17941063
Alignment:
Q  46 cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca 145  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||    
T  17940962 cttctacttttatttataaccacattccacaaaaccatgtgcagcaatcacacagttgttcaatgcaatgagaaagatcgcgagacactattaaccttca 17941061  T
Q  146 aa 147  Q
    ||    
T  17941062 aa 17941063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 14897163 - 14897068
Alignment:
Q  52 cttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa 147  Q
    ||||||||| |||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |||||| |||||||    
T  14897163 cttttatctataactacattccacaaaaccatgtgcagcaaccacaccgtggttcaatgcaatgagaaagatcgtgagatattgttaaacttcaaa 14897068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 18102660 - 18102761
Alignment:
Q  46 cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca 145  Q
    ||||||||||||||  |||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||  |||| ||||||||||||||    
T  18102660 cttctacttttatcggtaaccacattccacaaaagcatgtgcaccaatcacacagtggttcgatgcaatgagaaagatcatgagacactgttaaccttca 18102759  T
Q  146 aa 147  Q
    ||    
T  18102760 aa 18102761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 19350631 - 19350724
Alignment:
Q  50 tacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaacctt 143  Q
    ||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| | ||||||||||    
T  19350631 tacttttatctataaccacattccacaaaaccatgtgcaccaatcacacattggttcaatgcaatgagaaagatagagagacattgttaacctt 19350724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 19374895 - 19374992
Alignment:
Q  50 tacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa 147  Q
    ||||||||||| |||| ||||||||||||||  ||||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||||||||||    
T  19374895 tacttttatctataaccacattccacaaaacggtgtgcagcaatcacacattggttcgatgcaatgagaaagatcgagagacactattaaccttcaaa 19374992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 19414337 - 19414442
Alignment:
Q  145 aaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttcat 244  Q
    ||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||| |||||| ||||| ||||||||| |||||||||| ||||||||     
T  19414337 aaatttatatttttccaaactctctagtttaaatcatctagacttgagtaattcaagttttgttttccaatttgatttggattgggttcccccttttcaa 19414436  T
Q  245 ctctct 250  Q
    ||||||    
T  19414437 ctctct 19414442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 18116115 - 18116222
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    |||||||||||||||||||||||||||||||||| | ||||||||| || |||||||| |||||||| ||||  |||||||| ||||||||||||| |||    
T  18116115 ttcaaatttacatttttccaaactctctagtttagatcatctagacttgcgtaattcagattttgtaatccagattgatttggattgggttcctcccttt 18116214  T
Q  242 catctctc 249  Q
    || |||||    
T  18116215 caactctc 18116222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 19460733 - 19460831
Alignment:
Q  50 tacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaat 148  Q
    ||||||||||| |||| |||||| |||||| | |||||||||||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||    
T  19460733 tacttttatctataaccacattctacaaaagcttgtgcagcaatcacacagtggttggatgcaatgagaaagatcgagagacactcttaaccttcaaat 19460831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 18016184 - 18016273
Alignment:
Q  154 tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttca 243  Q
    |||||||||||||||||||||| | ||| ||||| |||||||||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  18016184 tttttccaaactctctagtttaaatcatttagacttgagtaattcaaattttgaattccaatttgatttggattgggttcctccttttca 18016273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 18022075 - 18022168
Alignment:
Q  46 cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaa 139  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| ||| ||||    
T  18022075 cttctacttttatcaataaccacattccacaaaaccatgtgcagcaattacacagtggtgcaatgcaatgaaaaagatcgagagacactcttaa 18022168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 19398945 - 19399042
Alignment:
Q  50 tacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa 147  Q
    ||||||||||| |||| | |||||||||||||||||| | |||||||||||| |||| ||||||||||||||||||||||| |||||||| |||||||    
T  19398945 tacttttatctataactatattccacaaaaccatgtgtaccaatcacacagttgttcgatgcaatgagaaagatcgagagacactgttaaacttcaaa 19399042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 19399858 - 19399967
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    ||||||||||| |||||||||||||||||||||| |    |||||| ||||||||||||||||| ||||||| ||||||||  |||||||||||||||||    
T  19399858 ttcaaatttacttttttccaaactctctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctcctttt 19399957  T
Q  242 catctctctc 251  Q
    || |||||||    
T  19399958 caactctctc 19399967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 19464506 - 19464615
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    ||||||||||  ||||||||||||||||||||||||  || ||||| ||||||||||||||||||| | |||  |||||||| |||||||||||||||||    
T  19464506 ttcaaatttaactttttccaaactctctagtttacattatttagacttgagtaattcaaattttgtctcccaaattgatttggattgggttcctcctttt 19464605  T
Q  242 catctctctc 251  Q
    || |||||||    
T  19464606 caactctctc 19464615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 19351555 - 19351651
Alignment:
Q  154 tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttcatctctct 250  Q
    |||||||||||||||||||||| |    |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  19351555 tttttccaaactctctagtttagaatggctagacttgagtaattcaaattttgtattccaatttgatttggattgggttcctccttttcaactctct 19351651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 19375784 - 19375880
Alignment:
Q  154 tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttcatctctct 250  Q
    |||||||||||||||||||||| |    |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  19375784 tttttccaaactctctagtttagattcactagacttgagtaattcaaattttgtattccaatttgatttggattgggttcctccttttcaactctct 19375880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 19413396 - 19413496
Alignment:
Q  46 cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca 145  Q
    ||||||||||||||  |||| | |||||||||||||||||||| ||||| |||||| |||| |||||||||||| |||||||||| ||||||||||||||    
T  19413396 cttctacttttatcaataaccatattccacaaaaccatgtgcaacaatcccacagttgttcgatgcaatgagaatgatcgagagacactgttaaccttca 19413495  T
Q  146 a 146  Q
    |    
T  19413496 a 19413496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 18108589 - 18108695
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    ||||||||||||||||||||| ||||||| ||||      |||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  18108589 ttcaaatttacatttttccaatctctctactttattttcactagacttgagtaattcaaattttgtattccagtttgatttggattgggttcctcctttt 18108688  T
Q  242 catctct 248  Q
    || ||||    
T  18108689 caactct 18108695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 19333199 - 19333293
Alignment:
Q  51 acttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca 145  Q
    |||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||| | ||||||| ||||    
T  19333199 acttttatctataactacattccacaaaaccatgtgtagcaatcacacagttgttcgctgcaatgagaaagatcgagagacattgttaacgttca 19333293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 17942104 - 17942205
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    ||||||||||  ||||| |||||||||||||||| ||   |||||| |||||||||||| |||||||||||| ||||||||| |||||||||||||||||    
T  17942104 ttcaaatttaacttttttcaaactctctagtttagactcactagacttgagtaattcaagttttgtattccaatttgatttggattgggttcctcctttt 17942203  T
Q  242 ca 243  Q
    ||    
T  17942204 ca 17942205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 17949982 - 17950083
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    |||||||||||||||||||||| | | ||||||| |  | |||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||    
T  17949982 ttcaaatttacatttttccaaattatttagtttagatgaactagacttgagtaattcaaattttgtaatccaatttgatttggattgggttcctcctttt 17950081  T
Q  242 ca 243  Q
    ||    
T  17950082 ca 17950083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 18103496 - 18103605
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    ||||||||| |||||||||||||||| ||||||| |  | |||||| ||||||| ||||||||||||||||| |||||| || ||||||| |||||||||    
T  18103496 ttcaaatttgcatttttccaaactctgtagtttagatgaactagacttgagtaactcaaattttgtattccaatttgatatggattgggtacctcctttt 18103595  T
Q  242 catctctctc 251  Q
    || |||||||    
T  18103596 caactctctc 18103605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 18107662 - 18107747
Alignment:
Q  62 taacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa 147  Q
    |||| ||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||    
T  18107662 taaccacattccacaaatgcatgtgcagcaatcacacagtggttcgatgcaatgagaaagatctagatatactcttaaccttcaaa 18107747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 18115166 - 18115263
Alignment:
Q  50 tacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa 147  Q
    ||||||||||| |||| |||||| |||||| |  ||||||||||||||||||||||  ||||||||||||||||||||||| ||| ||||||||||||    
T  18115166 tacttttatctataaccacattctacaaaagctcgtgcagcaatcacacagtggttggatgcaatgagaaagatcgagagacactcttaaccttcaaa 18115263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 18146024 - 18146149
Alignment:
Q  22 attctcacttcacaaatatcacttcttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaag 121  Q
    ||||| ||||||||||||||| ||||| | ||| ||| | |||| ||||||||||||| ||||||||||||||||||| |  ||| ||||||||||||||    
T  18146024 attcttacttcacaaatatcatttcttttgcttatatttataaccacattccacaaaagcatgtgcagcaatcacacaatttttcgatgcaatgagaaag 18146123  T
Q  122 atcgagagatactgttaaccttcaaa 147  Q
    |||  |||| ||||| ||||||||||    
T  18146124 atcatgagacactgtcaaccttcaaa 18146149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 251
Target Start/End: Original strand, 19381055 - 19381152
Alignment:
Q  154 tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttcatctctctc 251  Q
    |||||||||||||||||||||| |    |||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||    
T  19381055 tttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcaactctctc 19381152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 19424849 - 19424938
Alignment:
Q  154 tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttca 243  Q
    |||||||||||||||||||||| |  | |||||| |||||||||||| |||||||||||| ||||||||| |||||||||||||||||||    
T  19424849 tttttccaaactctctagtttagaagaactagacttgagtaattcaacttttgtattccaatttgatttggattgggttcctccttttca 19424938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 24494200 - 24494099
Alignment:
Q  46 cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca 145  Q
    ||||||||||||||  |||| ||||||||||| | |||||||||| |||||||| |||||  ||||||||||||||||||||||| ||||||| ||||||    
T  24494200 cttctacttttatccataaccacattccacaagagcatgtgcagccatcacacattggtttcatgcaatgagaaagatcgagagacactgttagccttca 24494101  T
Q  146 aa 147  Q
    ||    
T  24494100 aa 24494099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 19392357 - 19392456
Alignment:
Q  48 tctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa 147  Q
    ||||||||||| | |||  |||||  |||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  19392357 tctacttttatttataatcacattatacaaaagcatgtgcatcaatcacaccgtggttcaatgtaatgagaaagatcgagagacactgttaaccttcaaa 19392456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 14896240 - 14896131
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    ||||||||||  ||||||||||| ||||||||||      ||||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||||    
T  14896240 ttcaaatttaactttttccaaacactctagtttagtttcactagacatgagtaattcaaatgttgcattccaatttgatttggattgggttcctcctttt 14896141  T
Q  242 catctctctc 251  Q
    || |||||||    
T  14896140 caactctctc 14896131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 18165306 - 18165407
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    |||||||||||||||| |||||||||| | |||| |    |||||| ||||||||||||||||||||||||| |||| |||| |||||||||||||||||    
T  18165306 ttcaaatttacattttgccaaactctccaatttagattcactagacttgagtaattcaaattttgtattccaatttgctttggattgggttcctcctttt 18165405  T
Q  242 ca 243  Q
    ||    
T  18165406 ca 18165407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 19393299 - 19393408
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    |||||||||||||||||||||||||  |||||||      ||| || |||||||||||| ||||| |||||| |||||||||||||||||||||||||||    
T  19393299 ttcaaatttacatttttccaaactccatagtttagtttcactaaacttgagtaattcaatttttgaattccaatttgatttgaattgggttcctcctttt 19393398  T
Q  242 catctctctc 251  Q
    || |||||||    
T  19393399 caactctctc 19393408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 25462271 - 25462372
Alignment:
Q  46 cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca 145  Q
    ||||||||||| ||  |||| || |||||||||| |||||||| ||||||||| ||||||| ||||||||||||||| || |||| ||||||||||||||    
T  25462271 cttctacttttttcaataaccacgttccacaaaagcatgtgcaacaatcacactgtggttcgatgcaatgagaaagaccgtgagacactgttaaccttca 25462370  T
Q  146 aa 147  Q
    ||    
T  25462371 aa 25462372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 17727387 - 17727279
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    ||||||||||  |||||||||||||||||||||| |    ||| |  |||||||||||||||||| |||||| ||||||||| |||||||||||||||||    
T  17727387 ttcaaatttaactttttccaaactctctagtttagattcactacaattgagtaattcaaattttgcattccaatttgatttggattgggttcctcctttt 17727288  T
Q  242 catctctct 250  Q
    || ||||||    
T  17727287 caactctct 17727279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 19028616 - 19028508
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    ||||||||||  |||||||||||||||||||||| |    ||| |  |||||||||||||||||| |||||| ||||||||| |||||||||||||||||    
T  19028616 ttcaaatttaactttttccaaactctctagtttagattcactacaattgagtaattcaaattttgcattccaatttgatttggattgggttcctcctttt 19028517  T
Q  242 catctctct 250  Q
    || ||||||    
T  19028516 caactctct 19028508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 18015267 - 18015340
Alignment:
Q  46 cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaa 119  Q
    ||||| ||||||||| |||| |||||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  18015267 cttctccttttatctataaccacattccacataaccatgtgcagcaatcacacattggttcgatgcaatgagaa 18015340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 18146992 - 18147081
Alignment:
Q  154 tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttca 243  Q
    ||||||||| |||||||||||| |    ||||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||||||    
T  18146992 tttttccaacctctctagtttagattcactagacatgagtaattcaagttttgtattccaatttgatttggattgggttccaccttttca 18147081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 19380115 - 19380196
Alignment:
Q  62 taacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaacctt 143  Q
    |||| ||||||||||||  ||| |||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||    
T  19380115 taaccacattccacaaatgcatatgcagcaatcacacagtggttcgatgtaatgagaaagatctagagatactcttaacctt 19380196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 18143467 - 18143600
Alignment:
Q  18 gaccattctcacttcacaaatatcacttcttct------acttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgc 111  Q
    ||||||||| ||||||||||| ||||||||| |      |||| ||||  |||| |||||||||||||||||||||||||||||||||   |||| ||||    
T  18143467 gaccattcttacttcacaaatgtcacttcttttgcttatacttctatcaataaccacattccacaaaaccatgtgcagcaatcacaca---gttcgatgc 18143563  T
Q  112 aatgagaaagatcgagagatactgttaaccttcaaat 148  Q
    || ||||||||| |||||| | |||||| ||||||||    
T  18143564 aacgagaaagattgagagacattgttaagcttcaaat 18143600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 19419189 - 19419290
Alignment:
Q  46 cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca 145  Q
    |||||| |||| ||| |||| ||||||| || |  |||||||||  |||||||| |||||| ||||||||||||||||| ||||||||| ||||||||||    
T  19419189 cttctatttttttctataaccacattccgcatatgcatgtgcagatatcacacaatggttcgatgcaatgagaaagatctagagatactcttaaccttca 19419288  T
Q  146 aa 147  Q
    ||    
T  19419289 aa 19419290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 251
Target Start/End: Original strand, 19437120 - 19437217
Alignment:
Q  154 tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttcatctctctc 251  Q
    |||||||||||||||||||||| |    || ||| |||| |||||||||||||||||| | |||||| || ||||||||||||||||||| |||||||    
T  19437120 tttttccaaactctctagtttagattggctcgacttgagcaattcaaattttgtattcaaatttgatatggattgggttcctccttttcaactctctc 19437217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 25463240 - 25463309
Alignment:
Q  182 ctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttcatctctctc 251  Q
    |||||| |||||||||||| ||||||||| || ||||||||| ||||||||||||||||||| |||||||    
T  25463240 ctagacttgagtaattcaacttttgtattacaatttgatttggattgggttcctccttttcaactctctc 25463309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 18015339 - 18015395
Alignment:
Q  91 aatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa 147  Q
    ||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||    
T  18015339 aatcacacattggttcgatgcaatgagaaagatcgagagacactgttaaccttcaaa 18015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 18144340 - 18144440
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    ||||||||||||||||||||||||||||||||||      ||| | ||||| ||||||  |||||||||||| ||||||||| ||| |||||||||||||    
T  18144340 ttcaaatttacatttttccaaactctctagtttagttgtactatagatgaggaattcacgttttgtattccaatttgatttggattaggttcctcctttt 18144439  T
Q  242 c 242  Q
    |    
T  18144440 c 18144440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 19354062 - 19354154
Alignment:
Q  47 ttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaacctt 143  Q
    ||||| |||||||| |||| ||||||||||||    |||||| |||||||||  |||||| ||||||||||||||||||||||| | ||||||||||    
T  19354062 ttctatttttatctataaccacattccacaaa----tgtgcaacaatcacactatggttcgatgcaatgagaaagatcgagagacattgttaacctt 19354154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 19334199 - 19334265
Alignment:
Q  182 ctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttcatctct 248  Q
    |||||||||||| |||||||| |||||||||| ||||||||| ||||| ||||||||||||| ||||    
T  19334199 ctagacatgagttattcaaatattgtattccaatttgatttggattggattcctccttttcaactct 19334265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 17728437 - 17728382
Alignment:
Q  92 atcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa 147  Q
    |||||||| |||||| |||||||||||||||||  |||| ||||||||| ||||||    
T  17728437 atcacacattggttcgatgcaatgagaaagatcttgagacactgttaactttcaaa 17728382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 19029666 - 19029611
Alignment:
Q  92 atcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa 147  Q
    |||||||| |||||| |||||||||||||||||  |||| ||||||||| ||||||    
T  19029666 atcacacattggttcgatgcaatgagaaagatcttgagacactgttaactttcaaa 19029611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 172
Target Start/End: Original strand, 19461682 - 19461712
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagt 172  Q
    |||||||||||||||||||||||||||||||    
T  19461682 ttcaaatttacatttttccaaactctctagt 19461712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 13667655 - 13667582
Alignment:
Q  74 acaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttcaaa 147  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  13667655 acaaaaccatgtgcaacaatcacacattggttcaatgcaatgagaaagatcgagagacactcttaaccttcaaa 13667582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 13666800 - 13666692
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    ||||||||||  |||||| ||||||||||||||| ||   |||  | |||||||||||||  |||||||||| ||||||||| |||||||||||||||||    
T  13666800 ttcaaatttaactttttctaaactctctagtttagacacactatgcttgagtaattcaaagcttgtattccaatttgatttggattgggttcctcctttt 13666701  T
Q  242 catctctct 250  Q
     | ||||||    
T  13666700 taactctct 13666692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 15531547 - 15531682
Alignment:
Q  18 gaccattctcacttcacaaatatcacttct------tctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgc 111  Q
    ||||||||| ||||||||||| ||||||||      | ||||||||| | | || ||||||||||||| |||||||| |||| ||||| | ||||||||     
T  15531547 gaccattcttacttcacaaatgtcacttctattggttttacttttatgtattaccacattccacaaaagcatgtgcaccaataacacatttgttcaatgt 15531646  T
Q  112 aatgagaaagatcgagagatactgttaaccttcaaa 147  Q
    ||||||||||||||||||| ||||||||||||||||    
T  15531647 aatgagaaagatcgagagacactgttaaccttcaaa 15531682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 2710426 - 2710319
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    ||||||||||  |||||||||||||||||||||| |    |||||| |||||| ||||| || ||||||||| |||||||||||||||||||||||||||    
T  2710426 ttcaaatttaactttttccaaactctctagtttagattcactagacgtgagtagttcaacttgtgtattccaatttgatttgaattgggttcctcctttt 2710327  T
Q  242 catctctc 249  Q
    || |||||    
T  2710326 caactctc 2710319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 15535695 - 15535784
Alignment:
Q  154 tttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctccttttca 243  Q
    |||||||||||||||| ||||| |    |||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||    
T  15535695 tttttccaaactctctggtttagattcactagacttgagtaattcaaattttgtattccaattttatttggattgggttcctccttttca 15535784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 3953 - 3853
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    ||||||||||  |||||||||||||||||||||| |  | ||| || |||||||||||||| |||||||||  ||||||||| |||||||||||||||||    
T  3953 ttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaatattgtattccgatttgatttggattgggttcctcctttt 3854  T
Q  242 c 242  Q
    |    
T  3853 c 3853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 3423 - 3323
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    ||||||||||  |||||||||||||||||||||| |  | ||| || |||||||||||||| |||||||||  ||||||||| |||||||||||||||||    
T  3423 ttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaatattgtattccgatttgatttggattgggttcctcctttt 3324  T
Q  242 c 242  Q
    |    
T  3323 c 3323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 5553 - 5653
Alignment:
Q  142 ttcaaatttacatttttccaaactctctagtttacaccatctagacatgagtaattcaaattttgtattccattttgatttgaattgggttcctcctttt 241  Q
    ||||||||||  |||||||||||||||||||||| |  | ||| || |||||||||||||| ||||||| |  ||||||||| |||||||||||||||||    
T  5553 ttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaatattgtatttcgatttgatttggattgggttcctcctttt 5652  T
Q  242 c 242  Q
    |    
T  5653 c 5653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 4618 - 4719
Alignment:
Q  46 cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca 145  Q
    ||||||||||||| | |||| ||||| ||||||| ||  |||| ||||||||| ||||||  |||||||||||||||||| |||| | ||||||||||||    
T  4618 cttctacttttatatgtaaccacatttcacaaaatcacttgcaccaatcacactgtggttagatgcaatgagaaagatcgtgagacattgttaaccttca 4717  T
Q  146 aa 147  Q
    ||    
T  4718 aa 4719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 714 - 611
Alignment:
Q  44 ttcttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaacctt 143  Q
    ||||||||||||||| | |||| ||||| ||||||| ||  |||| ||||||||| ||||||  |||||||||||||||||| |||| | ||||||||||    
T  714 ttcttctacttttatatgtaaccacatttcacaaaatcacttgcaccaatcacactgtggttagatgcaatgagaaagatcgtgagacattgttaacctt 615  T
Q  144 caaa 147  Q
    ||||    
T  614 caaa 611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 8458703 - 8458804
Alignment:
Q  46 cttctacttttatctttaacaacattccacaaaaccatgtgcagcaatcacacagtggttcaatgcaatgagaaagatcgagagatactgttaaccttca 145  Q
    |||||||| |||||| |||| ||||||||||||| |||||||||||| |||||| || ||  |||||||||||| || ||| | | | ||||||||||||    
T  8458703 cttctactgttatctgtaaccacattccacaaaagcatgtgcagcaaccacacattgttttcatgcaatgagaatgaccgacaaacaatgttaaccttca 8458802  T
Q  146 aa 147  Q
    ||    
T  8458803 aa 8458804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University