View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19055_low_19 (Length: 251)

Name: NF19055_low_19
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19055_low_19
NF19055_low_19
[»] chr4 (2 HSPs)
chr4 (54-251)||(31202158-31202355)
chr4 (12-251)||(31215440-31215679)
[»] chr6 (1 HSPs)
chr6 (45-251)||(13605930-13606136)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 54 - 251
Target Start/End: Complemental strand, 31202355 - 31202158
Alignment:
Q  54 tatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaaggtgaaacgataagccgaaacatgaacaattttacgcctttg 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31202355 tatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaaggtgaaacgatgagccgaaacatgaacaattttacgcctttg 31202256  T
Q  154 ccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaataatcctcatgaattcaatgaagtacctgtgttttacagatc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31202255 ccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaataatcctcatgaattcaatgaagtacctgtgttttacagatc 31202158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 31215679 - 31215440
Alignment:
Q  12 atgaacagagccatttattccttaagttcacaggtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaa 111  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31215679 atgaacagagccatttattccttaagtccacaagtgaagcaatattcacaccctctaaataagaaaagaatatatgcatgcatgatcaattgaggaggaa 31215580  T
Q  112 ggtgaaacgataagccgaaacatgaacaattttacgcctttgccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaata 211  Q
    | ||||||||| ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  31215579 gctgaaacgatgagccgaaacatgaacaattttacgcctttgccgcggctccggagaacagattctagagcctatgatgctcctcctcacacttccaata 31215480  T
Q  212 atcctcatgaattcaatgaagtacctgtgttttacagatc 251  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  31215479 atcctcatgaattcaatgaagttcctgtgtttttcagatc 31215440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 45 - 251
Target Start/End: Complemental strand, 13606136 - 13605930
Alignment:
Q  45 gtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaaggtgaaacgataagccgaaacatgaacaatttt 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||    
T  13606136 gtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgcatgttcaattgaggaggaaggtgaaacgatgagccgaaacatgaacaatttt 13606037  T
Q  145 acgcctttgccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaataatcctcatgaattcaatgaagtacctgtgtttt 244  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||| |||||||||||||||    
T  13606036 acgccttagccagggcttcggagaacagattctagagcctatgatgctccttatcaaacttacaataatcctcatgaattcaattaagtacctgtgtttt 13605937  T
Q  245 acagatc 251  Q
    || ||||    
T  13605936 acggatc 13605930  T

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