View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19055_low_2 (Length: 643)
Name: NF19055_low_2
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 12 - 627
Target Start/End: Complemental strand, 13706684 - 13706072
Alignment:
| Q |
12 |
cacagacacaattgataaccacttccaaaaaccaaataaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggttactatatat |
111 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13706684 |
cacaaacacaattggtaaccacttccaaaaaccaaacaaaatatccatggcaactttattagtaataaacaaagacaacaccttaagggttactatatat |
13706585 |
T |
|
| Q |
112 |
cttctccatgaggtcaatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaacccatttttcattctatcatcatcatcattg |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||| |
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|
| T |
13706584 |
cttctccattaggtcaatttcctgctttataggaatttcaggaaaaaactccattccatttgatctaaacccacttgccattc---catcatcatcattg |
13706488 |
T |
|
| Q |
212 |
aacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccga |
311 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13706487 |
aacatcattggcacatagccaccaattccatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccga |
13706388 |
T |
|
| Q |
312 |
tattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagtgttgcctttgaact |
411 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
13706387 |
tattcatcatgctcggagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagcagtgttccctttgaact |
13706288 |
T |
|
| Q |
412 |
gttacctcgattctttttcttggctttctggcggcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggcattctccttgcaatt |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
13706287 |
gttacctcgattctttttcttggctttctggcgtcgcttagtggtgttccagtggtttttgacggagttctcggtgcgccccggcaatctccttgcaatt |
13706188 |
T |
|
| Q |
512 |
tccacccacttgttaccaactatcttgtgagcttcgatcaatattttgtcttcctcttcggtccatgactccttcttcaatcattcaaaaaagttaataa |
611 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13706187 |
tccgcccacttgttaccaactatcttgtgagcttcaatcaatattttgtcttcctcctcggtccatgactccttcttcaatcattcaaaaaagttaataa |
13706088 |
T |
|
| Q |
612 |
atggattagttatata |
627 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
13706087 |
atagattagttatata |
13706072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 12 - 627
Target Start/End: Complemental strand, 13644235 - 13643623
Alignment:
| Q |
12 |
cacagacacaattgataaccacttccaaaaaccaaataaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggttactatatat |
111 |
Q |
| |
|
|||| ||||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
13644235 |
cacaaacacaattggtaaccactttcaaacaccaaacaaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggtttctatatat |
13644136 |
T |
|
| Q |
112 |
cttctccatgaggtcaatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaacccatttttcattctatcatcatcatcattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
13644135 |
cttctccatgaggtcaatttcctgctttttaggaatttcaggaaaaaactccattccatttgatccaaacccacttgccattc---catcatcatcattg |
13644039 |
T |
|
| Q |
212 |
aacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccga |
311 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13644038 |
aacatcattggcacatagccaccaatttcatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccga |
13643939 |
T |
|
| Q |
312 |
tattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagtgttgcctttgaact |
411 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
13643938 |
tattcatcatgctcagagaattagtcatcatctccttttcaactttcttggcacaagtgacttccattatgtatttcaaaagcagtgttccctttgaact |
13643839 |
T |
|
| Q |
412 |
gttacctcgattctttttcttggctttctggcggcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggcattctccttgcaatt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |||| |||| |
|
|
| T |
13643838 |
gttacctcgattctttttcttggctttcaggcagcgcttagtggcgttccaatggtttttgacggagttctcggtgcgccccgacaatcttcttgaaatt |
13643739 |
T |
|
| Q |
512 |
tccacccacttgttaccaactatcttgtgagcttcgatcaatattttgtcttcctcttcggtccatgactccttcttcaatcattcaaaaaagttaataa |
611 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| | |
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|
| T |
13643738 |
tccgcccacttgttaccaactatcttgtgagcttcgaccaatattttgtcttcctcctcggtccatgcctccttcttcaatcattcaaaaaagttaatta |
13643639 |
T |
|
| Q |
612 |
atggattagttatata |
627 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13643638 |
atggattagttatata |
13643623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 198 - 587
Target Start/End: Original strand, 17173704 - 17174093
Alignment:
| Q |
198 |
catcatcatcattgaacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatt |
297 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||| ||| ||||| | | |||||||| ||||||||||| ||||||||||| || |||||| |||| |
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|
| T |
17173704 |
catcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctttgagctttcaaaatt |
17173803 |
T |
|
| Q |
298 |
tggctgattcccgatattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagt |
397 |
Q |
| |
|
| ||||| |||| |||||||||| ||||| ||||| |||||||||||||| ||| ||| || ||||||||||||||||||| ||| ||| |
|
|
| T |
17173804 |
cagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgtatttcagaagaagt |
17173903 |
T |
|
| Q |
398 |
gttgcctttgaactgttacctcgattctttttcttggctttctggcggcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggca |
497 |
Q |
| |
|
|| |||||||||| |||||||| ||||| |||||| || ||||| ||||||||||| ||||||||||| |||| ||||||||| |||||||| |||| |
|
|
| T |
17173904 |
attccctttgaactcttacctcggttcttcctcttgggattttggcgacgcttagtggcattccagtggttcttgatggagttctcagtgcgccctggca |
17174003 |
T |
|
| Q |
498 |
ttctccttgcaatttccacccacttgttaccaactatcttgtgagcttcgatcaatattttgtcttcctcttcggtccatgactccttct |
587 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17174004 |
atctccttgaaatttcagtccacttgtttccaactattttgtgagcttcgattagtattttgtcttcctcttcggtccatgaatccttct |
17174093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 446 - 594
Target Start/End: Original strand, 13467837 - 13467985
Alignment:
| Q |
446 |
cgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggcattctccttgcaatttccacccacttgttaccaactatcttgtgagctt |
545 |
Q |
| |
|
|||||||||| ||||||| |||| |||| ||||||||| ||||| || |||| ||| ||||||||||| |||||||||| |||||| |||||| |||| |
|
|
| T |
13467837 |
cgcttagtggagttccagcggttcttgatggagttctcagtgcgtccaggcagtctacttgcaatttcagcccacttgtttccaactgccttgtgtgctt |
13467936 |
T |
|
| Q |
546 |
cgatcaatattttgtcttcctcttcggtccatgactccttcttcaatca |
594 |
Q |
| |
|
||||||||| | |||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
13467937 |
cgatcaataatatgtcttcctcttcgctccatgactccttctacaatca |
13467985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 13425399 - 13425467
Alignment:
| Q |
197 |
tcatcatcatcattgaacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttca |
265 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||| ||||||| |||||||| | ||||| |||||||||| |
|
|
| T |
13425399 |
tcataatcatcattgaacgtcattggcacatatccaccaagttcatcttctaaagtagtcaaaccttca |
13425467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 17173578 - 17173666
Alignment:
| Q |
93 |
cttaagggttactatatatcttctccatgaggtcaatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaac |
181 |
Q |
| |
|
|||||||||| ||| ||| |||||||||| |||||||| || || | ||||| | |||||||||||| ||||||| |||||||||| |
|
|
| T |
17173578 |
cttaagggtttttattgatcatctccatgagatcaatttcttgattaagaggaacctcaggaaaaaactcaattccatatgatccaaac |
17173666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 4e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 198 - 601
Target Start/End: Original strand, 34653473 - 34653876
Alignment:
| Q |
198 |
catcatcatcattgaacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatt |
297 |
Q |
| |
|
|||||||| |||||||||||| ||| |||| ||| ||||||| || |||||| || ||||||||||||| |||||||||||| || |||||| | || |
|
|
| T |
34653473 |
catcatcaccattgaacatcattggagcatacccatcaatttcctcatttggattaaccaaaccttcagagctaaaatcactctccgagctttcaaagtt |
34653572 |
T |
|
| Q |
298 |
tggctgattcccgatattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagt |
397 |
Q |
| |
|
||| |||||||| | ||||||| |||| |||||| |||||| |||||||||| ||| ||| ||| | | |||||||||||||||||||| |||||| |
|
|
| T |
34653573 |
tgggtgattcccaaatttcatcacgctcgtagaattcgtcatcagctccttttcagcttccttagcatcattgacttccattatgtatttcaagagtagt |
34653672 |
T |
|
| Q |
398 |
gttgcctttgaactgttacctcgattctttttcttggctttctggcggcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggca |
497 |
Q |
| |
|
|| |||||||||| |||| ||||||||| |||| | || ||||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||| |
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|
| T |
34653673 |
tttccctttgaactattactccgattctttctcttagtattatggcggcgcttggtggcgttccagtggttcttgattgagttctcggtgcgcccttgca |
34653772 |
T |
|
| Q |
498 |
ttctccttgcaatttccacccacttgttaccaactatcttgtgagcttcgatcaatattttgtcttcctcttcggtccatgactccttcttcaatcattc |
597 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||||||||| ||||||||||| | ||||||||| || |||||||||||||| ||||||| ||||||| | |
|
|
| T |
34653773 |
ttctctttgcaatttcagcccacttgttcccaactatcttatgagcttcgattagtattttgtcctcttcttcggtccatgaatccttctacaatcatac |
34653872 |
T |
|
| Q |
598 |
aaaa |
601 |
Q |
| |
|
|||| |
|
|
| T |
34653873 |
aaaa |
34653876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 445 - 587
Target Start/End: Complemental strand, 25522755 - 25522613
Alignment:
| Q |
445 |
gcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggcattctccttgcaatttccacccacttgttaccaactatcttgtgagct |
544 |
Q |
| |
|
|||||||| || |||||| |||| |||| |||||||||||| || || || | |||| |||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
25522755 |
gcgcttagcggagttccaacggttcttgatggagttctcggtacgtccaggaagtctctttgcaatttcagcaaacttgttcccaactatcttgtgagct |
25522656 |
T |
|
| Q |
545 |
tcgatcaatattttgtcttcctcttcggtccatgactccttct |
587 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
25522655 |
tcgatcaatattttgtcttcctcttcactccatgactctttct |
25522613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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