View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19055_low_23 (Length: 241)
Name: NF19055_low_23
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 31202154 - 31201926
Alignment:
| Q |
1 |
tcattcttctagggccaatgtaagtctatcacattcttgatttaataacaacatttttaggatatggcagggaatatacaaaagaaaaatttaatttaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31202154 |
tcattcttctagggccaatgtaagtctatcacattcttgatttaataacaacatttttaggatatggcagggaatatacaaaagaaaaatttaatttaat |
31202055 |
T |
|
| Q |
101 |
tttggttcatgttaacaggatgagaggagttcaggtgctcaagatcctctccaattgtgggaaatccgaagaactcctgcagaacatcacaggataccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31202054 |
tttggttcatgttaacaggatgagaggagttcaggtgctcaagatcctctccaattgtgggaaatcagaagaactcctgcagaacatcacaggataccat |
31201955 |
T |
|
| Q |
201 |
agtaaggccaaatttcaagtttgcttatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31201954 |
agtaaggccaaatttcaagtttgcttatg |
31201926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 31215433 - 31215338
Alignment:
| Q |
5 |
tcttctagggccaatgtaagtctatcacattcttgatttaataacaa-catttttaggatatggca-gggaatatacaaaagaaaaatttaattta |
98 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||| |||||| |
|
|
| T |
31215433 |
tcttctagagccaatgtaagtctatcacattcttgatttaataacaattttttttaggatacggcaggggaatatacaaaagaaaaattgaattta |
31215338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 31215240 - 31215152
Alignment:
| Q |
141 |
aagatcctctccaattgtgggaaatccgaagaactcctgcagaacatcacaggataccatagtaaggccaaatttcaagtttgcttatg |
229 |
Q |
| |
|
||||||| ||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||| |||||| |||||| |||||| |
|
|
| T |
31215240 |
aagatccactccacttgtgggaagtcagaagaactcctacagaacatcacaggataccatagtaaggttaaatttaaagttttcttatg |
31215152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 13605918 - 13605865
Alignment:
| Q |
9 |
ctagggccaatgtaagtctatcacattcttgatttaataacaacatttttagga |
62 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
13605918 |
ctagggctaatgtaagtcaatcacattcttgatttaataacaatatttttagga |
13605865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University