View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19055_low_4 (Length: 593)
Name: NF19055_low_4
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 23 - 575
Target Start/End: Complemental strand, 45328727 - 45328174
Alignment:
| Q |
23 |
tgagatacaatccatcaacttcactccacaacaacaattattttctcatcacaaacnnnnnnnnctcagccgctgcaaaacagcaccagctatgttcatt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45328727 |
tgagatacaatccatcaacttcactccacaacaacaatcattttctcatcacaaacaaaaaaaactcagccgctgcaaaacagcaccagctatgttcatt |
45328628 |
T |
|
| Q |
123 |
ctcccacaccttaaacccatcaatgaccaacctcaacttcccaaacctcaaaccaattccatcattcgacaaggcatttggcttctccttatatacctct |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45328627 |
ctcccacaccttaaacccatcaatgaccaacctcaacttcccaaacctcaaaccaattccatcattcgacaaggcatttggcttctccttatatacctct |
45328528 |
T |
|
| Q |
223 |
ctgtcggtgtcataatatactctttcaacacaaaaaatttctctggcattgaaactcaccctgttgttgatgctctttatttttgtatagtcaccatgtg |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45328527 |
ctgtcggtgtcataatatactctttcaacacaaaaaatttctctggcattgaaactcaccctgttgttgatgctctttatttttgtatagtcaccatgtg |
45328428 |
T |
|
| Q |
323 |
tacaattggttatggagacatagctcctttaacaccaatgactaaactctttgcttgtgtttttg-tttagtgggttttggattcatagatatactctta |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45328427 |
tacaattggttatggagacatagctcctttaacaccaatgactaaactctttgcttgtgtttttgttttagtgggttttggattcatagatatactctta |
45328328 |
T |
|
| Q |
422 |
agtggacttgttaattttgttttggatttgcaagagaatacgattttaacagggcttcaaatgggtgctagagaagggtttactgctagggattatatag |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45328327 |
agtggacttgttaattttgttttggatttgcaagagaatacgattttaaccgggcttcaaatgggtgctagagaagggtttactgctagggattatatag |
45328228 |
T |
|
| Q |
522 |
ttgatgttgcaaaaggtaggatgagaattaggttgaaggttggtttagcacttg |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45328227 |
ttgatgttgcaaaaggtaggatgagaattaggttgaaggttggtttagcacttg |
45328174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University