View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19055_low_5 (Length: 491)
Name: NF19055_low_5
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 12 - 473
Target Start/End: Complemental strand, 35263324 - 35262862
Alignment:
| Q |
12 |
atgaaatatgtgtagtgtaggaatgtt-agttttggtaggctccaattctcataccatacccatgtgttatgagtacgtactacatcacaaataaaatgt |
110 |
Q |
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| T |
35263324 |
atgaaatatgtgtagtgtaggaatgtttagttttggtaggctccaattctcataccatacccatgtgttatgagtacgtactacatcacaaataaaatgt |
35263225 |
T |
|
| Q |
111 |
gtataattatatagtataaagtattttaactttaatgcaatgtatataaattgtgtctaatacagacaaagacaagctcgtggtattgcagtgtagtcta |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35263224 |
gtataattatatagtataaagtattttaactttaatgcaatgtatataaattgtgtctaatacagacgaagacaagctcgtggtattgcagtgtagtcta |
35263125 |
T |
|
| Q |
211 |
ttgtttgtattgtaagctactagtacacttactaaggaataaagacagctactcaaggacgatgttcatgttcaatatgtttcatttcggtggataagaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35263124 |
ttgtttgtattgtaagctactagtacacttactaaggaataaagacagctactcaaggacgatgttcatgttcaatatgtttcatttcggtggataagaa |
35263025 |
T |
|
| Q |
311 |
agaaaagaactactcaaatcgaataaaagaatatcagcaaatatttttaagataataacgatcaaatcttattctactaagttggtaatgatttttcaat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |
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| T |
35263024 |
agaaaagaactactcaaatcgaataaaagaatatcagcaaatatttttaagataataacaatcaaatcttattctactgagttgataatgatttttcaat |
35262925 |
T |
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| Q |
411 |
agatcagtactacattcgtccaaacacgtttttatgtaaagttatgatggaaagtgtaaataa |
473 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
35262924 |
agatcagtactacattcgtccaaacacgttttgctgtaaagttatgatgaaaagtgtaaataa |
35262862 |
T |
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