View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19055_low_7 (Length: 464)
Name: NF19055_low_7
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 3 - 452
Target Start/End: Complemental strand, 48878552 - 48878106
Alignment:
| Q |
3 |
tttgtaatattgtgttttcataacatctcggcgacataaaagaaataaaaaagccaattgattgtaccactcgagtagatttacaaaatcagatgaaatg |
102 |
Q |
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| T |
48878552 |
tttgtaatattgtgtttttataacatcctggcgacataaaagaaataaaaaagccaattgagtgtaccactcgagtagatttacaaaatcagatgaaatg |
48878453 |
T |
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| Q |
103 |
aaggtcccaaagtttaatccttaaaactatttaataaaaagggttgtacttaggtgacatatactcttcatttgtatgtatatatgtcacatgttacaac |
202 |
Q |
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| T |
48878452 |
aaggtccaaaagtttaatccttaaaactatttaataaaaagggttgtacttaggtgacatatactcttcatttgtatgtatat--gtcacatgttacaac |
48878355 |
T |
|
| Q |
203 |
accctattgaccctaaaggcctacatgtcaatatactcttcatttgtattagatggtaaaataggttgaacagggaaagatggaaatgcacttatacata |
302 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48878354 |
accctaatgaccctaaaggcctacatgtcaatatactcttcatttgtattagatggtaaaataggttgaacagggaaa-atggaaatgcacttatacata |
48878256 |
T |
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| Q |
303 |
ttaaagactatgaaattggaaggtatatcttaaactgtatcatgtctaagtgcatttccatcttcctcccaccaaaattagtataaccttggtcactatc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48878255 |
ttaaagactatgaaattggaaggtatatcttaaactttatcatgtctaagtgcatttccatcttcctcccaccaaaattagtataaccttggtcactatc |
48878156 |
T |
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| Q |
403 |
agagttcataagctataaacatgttgctaaaacggtatagtaattgtctg |
452 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48878155 |
agaattcataagctataaacatgttgctaaaacggtatagtaattgtctg |
48878106 |
T |
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