View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19055_low_8 (Length: 416)
Name: NF19055_low_8
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_low_8 |
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| [»] scaffold0062 (4 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Original strand, 15550 - 15941
Alignment:
| Q |
14 |
cattctcaacaaatttaagggattttccagttgaaataattaaaaccaatatctcagaattccacttcattttggggtttgccactgaggagtatgacgc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15550 |
cattctcaacaaatttaagggattttccagttgaaataatcaaaaccaatatctcagaattccacttcattttgggatttgccactgaggagtatgacgc |
15649 |
T |
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| Q |
114 |
tcaaaataaaggcacaggagttttcaaggaaacttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15650 |
tcaaaataaaggcacaggagttttcaaggaaacttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaag |
15749 |
T |
|
| Q |
214 |
gtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaaggga |
313 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| || |
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| T |
15750 |
gtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtga |
15849 |
T |
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| Q |
314 |
tcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggt |
405 |
Q |
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| T |
15850 |
tcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggt |
15941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Original strand, 25718 - 26109
Alignment:
| Q |
14 |
cattctcaacaaatttaagggattttccagttgaaataattaaaaccaatatctcagaattccacttcattttggggtttgccactgaggagtatgacgc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25718 |
cattctcaacaaatttaagggattttccagttgaaataatcaaaaccaatatctcagaattccacttcattttgggatttgccactgaggagtatgacgc |
25817 |
T |
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| Q |
114 |
tcaaaataaaggcacaggagttttcaaggaaacttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25818 |
tcaaaataaaggcacaggagttttcaaggaaacttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaag |
25917 |
T |
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| Q |
214 |
gtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaaggga |
313 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| || |
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| T |
25918 |
gtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtga |
26017 |
T |
|
| Q |
314 |
tcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggt |
405 |
Q |
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| T |
26018 |
tcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggt |
26109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Original strand, 35884 - 36275
Alignment:
| Q |
14 |
cattctcaacaaatttaagggattttccagttgaaataattaaaaccaatatctcagaattccacttcattttggggtttgccactgaggagtatgacgc |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35884 |
cattctcaacaaatttaagggattttccagttgaaataatcaaaaccaatatctcagaattccacttcattttgggatttgccactgaggagtatgacgc |
35983 |
T |
|
| Q |
114 |
tcaaaataaaggcacaggagttttcaaggaaacttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35984 |
tcaaaataaaggcacaggagttttcaaggaaacttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaag |
36083 |
T |
|
| Q |
214 |
gtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaaggga |
313 |
Q |
| |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| || |
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| T |
36084 |
gtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtga |
36183 |
T |
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| Q |
314 |
tcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggt |
405 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36184 |
tcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggt |
36275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 59 - 372
Target Start/End: Original strand, 5267 - 5580
Alignment:
| Q |
59 |
ccaatatctcagaattccacttcattttggggtttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaacttggaatactag |
158 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| | ||||||||||| | | |||| | |||||||||||||||||| ||||||||| | |
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| T |
5267 |
ccaatatctcagaattccacttcattttgggctttgcaagcgaggagtatgatgataaaaaaagaggcacaggagttttcaaaacaacttggaacgttga |
5366 |
T |
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| Q |
159 |
agcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattc |
258 |
Q |
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| T |
5367 |
attcttcggtccagaagatgtgaaacggttgaaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtgac---gaaaaaactccattc |
5463 |
T |
|
| Q |
259 |
aatcctgttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggc---aacataattgatg |
355 |
Q |
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||||||| |||||| ||||| |||| | | |||||| |||||||||||| |||||||| || || ||||||||||| |||| | |||||||||| |
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| T |
5464 |
aatcctgctgaggataatatatggacggagaaagctgtggcttcactcaaagtgatcatcctaagattcaaggatcaaagtggcagaagtataattgatg |
5563 |
T |
|
| Q |
356 |
gcattgacattaattat |
372 |
Q |
| |
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| |||||||| |||||| |
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|
| T |
5564 |
gtattgacatcaattat |
5580 |
T |
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