View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19055_low_9 (Length: 392)
Name: NF19055_low_9
Description: NF19055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19055_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 38494751 - 38495114
Alignment:
| Q |
17 |
aacaccatactggatatatattcaaaatgccatgcatctagagaacaccaagactaaataaaaacatgaaaaatcagcagtcatatggtgtgcttggaag |
116 |
Q |
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| T |
38494751 |
aacaccatactggatatatattcaaaatgccatgcatctagagaacaccaagactaaataaaaacatgaaaaatcagcagtcatatggtgcgcttggaag |
38494850 |
T |
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| Q |
117 |
ggatgnnnnnnntcttaacatgttcaaatacatttatcaatttgactccattctgtacttatttgatcgttttcatctcgacaaagcacacctagacctt |
216 |
Q |
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| T |
38494851 |
ggatgaaaaaaatcttaacatgttcaaatacatttatcaatttgactccattctgtacttatttgatcgttttcatctcgacaaagcacacctagacctt |
38494950 |
T |
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| Q |
217 |
taatattagtagaaaacatacatatacatttataaatgtagcattattatacatgtttgtgtatgaactaccataagaaattgtcagattgagtttgaga |
316 |
Q |
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| T |
38494951 |
taatattagtagaaaacatacatatacatttataaatgtagcattattatacatgtttgtgtatgaactaccataagaaattgtcagattgagtttgaga |
38495050 |
T |
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| Q |
317 |
gtcttcaagatcattggaaggagagtgtacatgtcttccttcatatgttgttattaccatcctt |
380 |
Q |
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| T |
38495051 |
gtcttcaagatcattggaaggagagtgtacatgtcttccttcatatgttgttattaccatcctt |
38495114 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 43416800 - 43416724
Alignment:
| Q |
300 |
tcagattgagtttgagagtcttcaagatcattggaaggagagtgtacatgtcttccttcatatgttgttattaccat |
376 |
Q |
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| T |
43416800 |
tcagactgagtttgtgattcttcaagttcatttgatggagagtgagcatgtcttccttcatatgtggttatcaccat |
43416724 |
T |
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