View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19056_high_1 (Length: 384)
Name: NF19056_high_1
Description: NF19056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19056_high_1 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 174 - 384
Target Start/End: Complemental strand, 34016918 - 34016708
Alignment:
| Q |
174 |
aggaattgatctaatacaaagcttatcaggcgatgcattgtgaagggacaaatatttttgaagatatcattttctatatttacatttccttgcnnnnnnn |
273 |
Q |
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| T |
34016918 |
aggaattgatctaatacaaagcttatcaggcgatgcattgtgaagggacaaatatttttgaagatatcattttctatatttacatttccttgcttttttt |
34016819 |
T |
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| Q |
274 |
caggttcccccagctgaattagagcacatacttcataccaatcctgaaattgctgatgctgcggtagtcccgtatgtatctactgctttaatcaatcatt |
373 |
Q |
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| T |
34016818 |
caggttcccccagctgaattagagcacatacttcataccaatcctgaaattgctgatgctgcagtagtcccgtatgtatctactgctttaatcaatcatt |
34016719 |
T |
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| Q |
374 |
cgtctctgtat |
384 |
Q |
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|||||| |||| |
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| T |
34016718 |
cgtctcagtat |
34016708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 34018226 - 34018061
Alignment:
| Q |
11 |
atactcctttgactcgtccggttgttccggatgagaagaggatagctgctgtgtctgattgacttgtttcaaccgggcgaagttcggtatcagtatgaat |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
34018226 |
atactcctttgactcgtccggttgttccggatgagaagaggatagctgctgtgtctgattgacttgtttcaacagggcgaagttcggtatcagtatcaat |
34018127 |
T |
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| Q |
111 |
ggtggaattgagcacggaaagaaaagaaggagaatcaaagatgactgtgccgaggggtagtttagg |
176 |
Q |
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| T |
34018126 |
ggtggaattgagcacggaaagaaaagaaggagaatcaaagatgactgtgccgaggggtagtttagg |
34018061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 174 - 378
Target Start/End: Original strand, 34023658 - 34023865
Alignment:
| Q |
174 |
aggaattgatctaatacaaagcttatcaggcgatgcattgtgaag-ggacaaatatttttgaagatatcattttctatat--ttacatttccttgcnnnn |
270 |
Q |
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| T |
34023658 |
aggaattgatcaaatacaaagcttatcaggtgatgcattgtgaagtggacatatatttttgaagatatcatttgctatatatttacatttccttgctttt |
34023757 |
T |
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| Q |
271 |
nnncaggttcccccagctgaattagagcacatacttcataccaatcctgaaattgctgatgctgcggtagtcccgtatgtatctactgctttaatcaatc |
370 |
Q |
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| T |
34023758 |
tttcaggttcccccagctgaattagagcacatacttcataccaatcctgaaattgctgatgctgcagtagtcccgtatgtatctactgctttaatcaatc |
34023857 |
T |
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| Q |
371 |
attcgtct |
378 |
Q |
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| T |
34023858 |
aatcgtct |
34023865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 174 - 378
Target Start/End: Original strand, 34030894 - 34031106
Alignment:
| Q |
174 |
aggaattgatctaatacaaagcttatcaggcgatgcattgtgaag-ggacaaatatttttgaagatatcattttctata-------tttacatttccttg |
265 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||| |||| |||||||||||||| |
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| T |
34030894 |
aggaattgatcaaatacaaagcttatcaggtgatgcattgtgaagtggacagatatttttgaagataccatttgctatcgcctatctttacatttccttg |
34030993 |
T |
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| Q |
266 |
cnnnnnnncaggttcccccagctgaattagagcacatacttcataccaatcctgaaattgctgatgctgcggtagtcccgtatgtatctactgctttaat |
365 |
Q |
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| T |
34030994 |
ctatttttcaggttcccccagctgaattagagcacatacttcataccaatcctgaaattgctgatgctgcagtagtcccgtatgtatctactgctttaat |
34031093 |
T |
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| Q |
366 |
caatcattcgtct |
378 |
Q |
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| T |
34031094 |
caatcattcgtct |
34031106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 34028026 - 34027861
Alignment:
| Q |
11 |
atactcctttgactcgtccggttgttccggatgagaagaggatagctgctgtgtctgattgacttgtttcaaccgggcgaagttcggtatcagtatgaat |
110 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| |||| ||||| | | |
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| T |
34028026 |
atactcctttgactcgtcccgttgttccggatgagaagaggattgctgctgtatctgattgacttgttacaaccgggcgaagttcagtatgagtatcagt |
34027927 |
T |
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| Q |
111 |
ggtggaattgagcacggaaagaaaagaaggagaatcaaagatgactgtgccgaggggtagtttagg |
176 |
Q |
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| T |
34027926 |
ggtggaattgatcacggaaagaaaagaaggagaatcagttatgacagtgcctaggggtagtttagg |
34027861 |
T |
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