View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19056_low_3 (Length: 282)
Name: NF19056_low_3
Description: NF19056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19056_low_3 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 34933353 - 34933634
Alignment:
| Q |
1 |
ctcactcagggtggccttccccaatataatagccccagctttccttaacttgttaacaacacccgcgtctcttggcaccagtgagccaagcaatgcaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34933353 |
ctcactcagggtggccttccccaatataatagccccagctttccttaacttgttaacaacacccgcgtctcttggcaccagtgagccaagcaatgcaaaa |
34933452 |
T |
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| Q |
101 |
gagcctgcagtagtgttcaatttatccttagttgcaatgttatccttaaccaaaataggtattccatgcaaccttgaaagagaacttggtgttttttccc |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| || |
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| T |
34933453 |
gagccagcagtagtgttcaatttatccttagttgcaatgttatccttaaccaaaataggtattccatgcaaccttgaaagagaacctactgctttagtcc |
34933552 |
T |
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| Q |
201 |
ttctctcttggtcagctctatctgcttgtgctaatgcatctggattgacctccaagactcctttgagaaccgggttttggat |
282 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||| |||||||| || ||||||||||||||||||||||| |
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| T |
34933553 |
ttctttcttggtcagctctatctgcttgtgctagtgcatctggattcacctccaacacccctttgagaaccgggttttggat |
34933634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 34899099 - 34899380
Alignment:
| Q |
1 |
ctcactcagggtggccttccccaatataatagccccagctttccttaacttgttaacaacacccgcgtctcttggcaccagtgagccaagcaatgcaaaa |
100 |
Q |
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|||||||| ||||| ||||||||||| ||||| ||||||| |||||||||| |||||||||| || ||||||||||| | ||| ||||||||||||||| |
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| T |
34899099 |
ctcactcaaagtggctttccccaatatgatagcaccagcttcccttaacttggtaacaacacctgcatctcttggcacaactgatccaagcaatgcaaaa |
34899198 |
T |
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| Q |
101 |
gagcctgcagtagtgttcaatttatccttagttgcaatgttatccttaaccaaaataggtattccatgcaaccttgaaagagaacttggtgttttttccc |
200 |
Q |
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| T |
34899199 |
gagccagcagtagtgttcaatttatccttagttgcaatgttatccttaaccaaaataggtattccatgcaaccttgaaagagaacttggtgttttttccc |
34899298 |
T |
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| Q |
201 |
ttctctcttggtcagctctatctgcttgtgctaatgcatctggattgacctccaagactcctttgagaaccgggttttggat |
282 |
Q |
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|||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
34899299 |
ttctctcttgatcagctttatctgcttctgctaatgcatctggattgacctccaagacacctttgagaactgggttttggat |
34899380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 34912938 - 34913216
Alignment:
| Q |
1 |
ctcactcagggtggccttccccaatataatagccccagctttccttaacttgttaacaacacccgcgtctcttggcaccagtgagccaagcaatgcaaaa |
100 |
Q |
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|||||||| ||||||||||| ||||| ||||| |||||||||||||||||| |||| ||||| || ||||||||||| | ||||||||| | ||||||| |
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| T |
34912938 |
ctcactcaaagtggccttccctaatatgatagcaccagctttccttaacttggtaaccacacctgcatctcttggcacgactgagccaagaagtgcaaaa |
34913037 |
T |
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| Q |
101 |
gagcctgcagtagtgttcaatttatccttagttgcaatgttatccttaaccaaaataggtattccatgcaaccttgaaagagaacttggtgttttttccc |
200 |
Q |
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||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34913038 |
gagccagcagtagtgttcaatctatccttagttgcagtgttatccttaaccaaaataggtattccatgcaaccttgaaagagaacttggtgttttttccc |
34913137 |
T |
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| Q |
201 |
ttctctcttggtcagctctatctgcttgtgctaatgcatctggattgacctccaagactcctttgagaaccgggttttg |
279 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |
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| T |
34913138 |
ttctctcttggtcagctttatctgcttgtgctaatgcatctggattcacctccaagactccttttagaactgggttttg |
34913216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 34929262 - 34929543
Alignment:
| Q |
1 |
ctcactcagggtggccttccccaatataatagccccagctttccttaacttgttaacaacacccgcgtctcttggcaccagtgagccaagcaatgcaaaa |
100 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| | ||||||||||| ||||||| |
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| T |
34929262 |
ctcactcaaagtggccttgcccaatataatagccccagctttccttaacttgttaactacacctgcatctcttggcactactgagccaagcagtgcaaaa |
34929361 |
T |
|
| Q |
101 |
gagcctgcagtagtgttcaatttatccttagttgcaatgttatccttaaccaaaataggtattccatgcaaccttgaaagagaacttggtgttttttccc |
200 |
Q |
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||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| | |
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| T |
34929362 |
gagcctgcagtagtgtttagcttatcctttgttgcaatgttatccttaaccaaaataggtattccatgcaaccttgaaagagaacctgctgctttttctc |
34929461 |
T |
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| Q |
201 |
ttctctcttggtcagctctatctgcttgtgctaatgcatctggattgacctccaagactcctttgagaaccgggttttggat |
282 |
Q |
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||||||| | ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||| |
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| T |
34929462 |
ttctctccttgtcagctctatctgcttgtgctagtgcatctggattcacctccaagacacctttgagaactgggttttggat |
34929543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 34922524 - 34922805
Alignment:
| Q |
1 |
ctcactcagggtggccttccccaatataatagccccagctttccttaacttgttaacaacacccgcgtctcttggcaccagtgagccaagcaatgcaaaa |
100 |
Q |
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|||||||| ||||| ||||||||||| ||||| ||||||| |||||||||| |||||||||| || ||||||||||| | ||| ||||||||||||||| |
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| T |
34922524 |
ctcactcaaagtggctttccccaatatgatagcaccagcttcccttaacttggtaacaacacctgcatctcttggcacaactgatccaagcaatgcaaaa |
34922623 |
T |
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| Q |
101 |
gagcctgcagtagtgttcaatttatccttagttgcaatgttatccttaaccaaaataggtattccatgcaaccttgaaagagaacttggtgttttttccc |
200 |
Q |
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||||||||||| ||||| | |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| |||||||| |
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| T |
34922624 |
gagcctgcagtggtgtttagcttatccttagttgcaatgttatccttaaccaacataggtattccatgtaaccttgaaagagaaccaggtgctttttccc |
34922723 |
T |
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| Q |
201 |
ttctctcttggtcagctctatctgcttgtgctaatgcatctggattgacctccaagactcctttgagaaccgggttttggat |
282 |
Q |
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|||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34922724 |
ttctctcttgatcagctttatctgcttctgctaatgcatctggattgacctccaagactcctttgagaactgggttttggat |
34922805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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