View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19056_low_6 (Length: 237)
Name: NF19056_low_6
Description: NF19056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19056_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 37201791 - 37201920
Alignment:
| Q |
91 |
ttgactaataagacgagactaaaagtttggtggaaacaggaacaatgagaaagatgacactaatgataatgaaggaacttttataagaccaatgaggtga |
190 |
Q |
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| T |
37201791 |
ttgactaataagacgagactaaaagtttggtggagacaggaacaatgagaaagatgacactaatgataatgaaggaacttttataagaccgatgaggtga |
37201890 |
T |
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| Q |
191 |
ggctggaaaaaccaatgagaacatcagtgt |
220 |
Q |
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| T |
37201891 |
ggctggaaaaaccaatgagaacatcagtgt |
37201920 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 37201683 - 37201757
Alignment:
| Q |
12 |
aggagcataagttaacgtgttttgttggaagtcagtgaggattcaaaggcctacagcttatatgatcataacacaaagtttg |
93 |
Q |
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| T |
37201683 |
aggagcataagttaacgtgttttgttggaagtcagtgaggatt-------ctatagcttatatgatcataacacaaagtttg |
37201757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 26554143 - 26554193
Alignment:
| Q |
28 |
gtgttttgttggaagtcagtgaggattcaaaggcctacagcttatatgatc |
78 |
Q |
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| T |
26554143 |
gtgttttgttgggagtaagtgatgaatcaaaggcctacaggttatatgatc |
26554193 |
T |
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