View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19057_high_10 (Length: 218)
Name: NF19057_high_10
Description: NF19057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19057_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 33134945 - 33134759
Alignment:
| Q |
14 |
cagagaagaaaacacagattttttcagatgggttgtttctatgtggtttgttgatttctaactgttctcgtttcatgtgttcgccgtatttgaagatgaa |
113 |
Q |
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| T |
33134945 |
cagagaagaaaacacagattttttcagatgggttgtttctatgtgttttgttgatttctaactgttctcgtttcatgtgttcgccgtatttgaagatgaa |
33134846 |
T |
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| Q |
114 |
atcttcacgagacatggtgagttcggtttcttcgacgaggtagtttctgtcggataacatttggagaagggttttctggattctgaa |
200 |
Q |
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| T |
33134845 |
atcttcacgagacatggtgagttcggtttcttcgacgaggtagtttctgtcggataacatttggagaagggttttctggattctgaa |
33134759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 33140827 - 33140646
Alignment:
| Q |
17 |
agaagaaaacacagattttttcagatgggttgtttctatgtggtttgttgatttctaactgttctcgtttcatgtgttcgccgtatttgaagatgaaatc |
116 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33140827 |
agaagaacacacagattttttcagataggttgtttctatgtgttgtgttgatttctaactgttctcgtttcatgtgttcgccgaatttgaagatgaaatc |
33140728 |
T |
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| Q |
117 |
ttcacgagacatggtgagttcggtttcttcgacgaggtagtttctgtcggataacatttggagaagggttttctggattctg |
198 |
Q |
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| T |
33140727 |
ttctcgagacatggtaagttgggtttcgtcgacgaggtagtttctgtcgaatagcatttggagaatggttttgcggattctg |
33140646 |
T |
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