View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19057_high_2 (Length: 472)
Name: NF19057_high_2
Description: NF19057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19057_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 35 - 454
Target Start/End: Original strand, 40513679 - 40514086
Alignment:
| Q |
35 |
aactctttcatagtcttctgagaatactcttgacaatactcttgttttcaaaaacttgttccttgtttcattctttcgagactttttcgaactttgttca |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513679 |
aactctttcatagtcttctgagaatactcttgacaatactcttgttttcaaaaacttgttccttgtttcattctttcgagactttttcgaactttgttca |
40513778 |
T |
|
| Q |
135 |
ggtatttgtgttccatcaatgtggtatttcaccttaactccacttgttgtgggaatttttgatatttcaggatcatcttcaaacctatgaaaaataatat |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513779 |
ggtatttgtgttccatcaatgtggtatttcaccttaactccacttgttgtgggaatttttgatatttcaggatcatcttcaaacctatgaaaa------- |
40513871 |
T |
|
| Q |
235 |
gaaaagttcataaacttgaagactaattag--ctaaataacttggaattttgaaaattatttgagggaatttaggaaacacacacctttcaggtcttgga |
332 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
40513872 |
-----gttcataaacttgaagactaattagtactaaataacttggaattttgaaaattatttgagggaatttaggaaacac--acctttcagatcttgga |
40513964 |
T |
|
| Q |
333 |
ttatcaaatcccatactggttttccaaaagaatcaaatttctcttcgaccaaaactatgaatctagataacaagaaaaaattggttaatgtattgtggcc |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513965 |
ttatcaaatcccatactggttttccaaaagaatcaaatttctcttcgaccaaaactatgaatctagataacaagaaaaaattggttaatgtattgtggcc |
40514064 |
T |
|
| Q |
433 |
acaaatatcgatgatggtaacg |
454 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40514065 |
acaaatatcgatgatggtaacg |
40514086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University