View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19057_high_7 (Length: 255)
Name: NF19057_high_7
Description: NF19057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19057_high_7 |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 44949448 - 44949702
Alignment:
| Q |
1 |
gaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaatgcccaccagtgatatcctctgaaggc |
100 |
Q |
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| T |
44949448 |
gaaaatgcatttcaagcacaccttctttagagcatctataaaacccgtatcaagcttcccatcactataaaaatgcccaccagtgatatcctctgaaggc |
44949547 |
T |
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| Q |
101 |
tcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgcctttagggatttat |
200 |
Q |
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| T |
44949548 |
tcaagttctgctgccatgtagtgctttatatcttcgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgcctttagggatttat |
44949647 |
T |
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| Q |
201 |
tcaacacagtagtaggaaggtttatttctctattcatgtctctttacgagattcc |
255 |
Q |
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| T |
44949648 |
tcaacacagtagtaggaaggtttatttctctattcatgtctctttacgagattcc |
44949702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 6470321 - 6470464
Alignment:
| Q |
25 |
ctttagagcatctataaaacccatatcaagcttcccatcactataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgc |
124 |
Q |
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| T |
6470321 |
ctttagagcgtctataaaaaccgtatcaagactcccttcactgtaaaaatgcccaccagttatatccttcgaaggctcaaattctgttcccatgtagatc |
6470420 |
T |
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| Q |
125 |
tttatatctttgttttgaatgttaggaacttcctttaccatact |
168 |
Q |
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| T |
6470421 |
tttatacctttgtttttaatggaaggaagttcctttaccatact |
6470464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 44943742 - 44943804
Alignment:
| Q |
124 |
ctttatatctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
186 |
Q |
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| T |
44943742 |
ctttatacctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
44943804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44943659 - 44943734
Alignment:
| Q |
1 |
gaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaatgc |
76 |
Q |
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| T |
44943659 |
gaaaatgcatttcaagtacacattctttagagtatctatcaaaaccgtatcaagtttcccatcaccataaaaatgc |
44943734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 419385 - 419220
Alignment:
| Q |
3 |
aaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaatgcccaccagtgatatcctctgaaggctc |
102 |
Q |
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||||||||| ||||||| ||||||||||||||||||||| || ||||||| |||| || || ||||||||||||||||| ||||||| |||||||| |
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| T |
419385 |
aaatgcattgcaagcacgttttctttagagcatctataaaaaccgtatcaagactcccttcgctgtaaaaatgcccaccagttatatccttcgaaggctc |
419286 |
T |
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| Q |
103 |
aagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttaccatact |
168 |
Q |
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| T |
419285 |
aaattctgttcccatgtagatctttatacctttgtttttaatggaaggaagttcctttaccatact |
419220 |
T |
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