View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19057_low_3 (Length: 440)

Name: NF19057_low_3
Description: NF19057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19057_low_3
NF19057_low_3
[»] scaffold0215 (1 HSPs)
scaffold0215 (18-397)||(22470-22857)
[»] chr6 (3 HSPs)
chr6 (18-397)||(18851551-18851938)
chr6 (18-369)||(16352679-16353038)
chr6 (392-429)||(18851974-18852011)


Alignment Details
Target: scaffold0215 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 22857 - 22470
Alignment:
Q  18 ctatattgaaca-aggcaattaaagcaataatcacagcaacaaatatacctttatgggtccggtacgttcgtcaatcacagcaaacgtcgtcgtcgccgc 116  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  22857 ctatattgagcagaggcaattaaagcaataatcacagcaacaaatatacctttgtggatccggtacgttcgtcaatcacagcaaacgtcgtcgtcgccgc 22758  T
Q  117 aacggccttcagagattgtttgaacaagatgcgggctctgaaattttgaaacagcatagatttcccaaaggattcgtagaattttcggaagaggtgtgag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22757 aacggccttcagagattgtttgaacaagatgcgggctctgaaattttgaaacagcatagatttcccaaaggattcgtagaattttcggaagaggtgtgag 22658  T
Q  217 attattcgagggtagaatcga-------agaaaggggattttcagggttctgggaaccgtgaaagatggttggagattttcaaaggaactgaattccatg 309  Q
    |||||||||||||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22657 attattcgagggtagaatcgaagaagtaagaaagggtattttcagggttctgggaaccgtgaaagatggttggagattttcgaaggaactgaattccatg 22558  T
Q  310 tttgaggattggaattcgaaagcttcagggattgagtggtttacctaggcaaagaaggtttttcgttttgagattgaattacgttatt 397  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  22557 tttgaggattggaattcgaaagcttcagggattgagtggttcacctgggcaaagaaggtttttcgttttgagattgaattacgttatt 22470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 18851551 - 18851938
Alignment:
Q  18 ctatattgaaca-aggcaattaaagcaataatcacagcaacaaatatacctttatgggtccggtacgttcgtcaatcacagcaaacgtcgtcgtcgccgc 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||    
T  18851551 ctatattgaacagaggcaattaaagcaataatcacagcaacaaatattcctttgtggatccgttacgttcgtcaatcacagcaaacgtcgtcgtcgccgc 18851650  T
Q  117 aacggccttcagagattgtttgaacaagatgcgggctctgaaattttgaaacagcatagatttcccaaaggattcgtagaattttcggaagaggtgtgag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18851651 aacggccttcagagattgtttgaacaagatgcgggctctgaaattttgaaacaacatagatttcccaaaggattcgtagaattttcggaagaggtgtgag 18851750  T
Q  217 attattcgagggtagaatcg-------aagaaaggggattttcagggttctgggaaccgtgaaagatggttggagattttcaaaggaactgaattccatg 309  Q
    ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18851751 attattcgagggtagaatcgaagaagtaagaaaggggattttcagggttctgggaaccgtgaaagatggttggagattttcaaaagaactgaattccatg 18851850  T
Q  310 tttgaggattggaattcgaaagcttcagggattgagtggtttacctaggcaaagaaggtttttcgttttgagattgaattacgttatt 397  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||    
T  18851851 tttgaggattggaattcgaaagcttcagggattgagtggttcacctgggcaaagaaggtttttcgttttgagattgaattactttatt 18851938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 16353038 - 16352679
Alignment:
Q  18 ctatattgaaca-aggcaattaaagcaataatcacagcaacaaatatacctttatgggtccggtacgttcgtcaatcacagcaaacgtcgtcgtcgccgc 116  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16353038 ctatattgaacagaggcaattaaagcaataatcacaacaacaaatatacctttgtgggtccggtacgttcgtcaatcacagcaaacgtcgtcgtcgccgc 16352939  T
Q  117 aacggccttcagagattgtttgaacaagatgcgggctctgaaattttgaaacagcatagatttcccaaaggattcgtagaattttcggaagaggtgtgag 216  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||||||| || | ||||| ||||||||||||||    
T  16352938 gacggccttcagagattgtttgaacaagatgcgggctctgaaatttcgaaagagcgtagatttctcaaaggatttgtggcattttgggaagaggtgtgag 16352839  T
Q  217 attattcgagggtagaatcga-------agaaaggggattttcagggttctgggaaccgtgaaagatggttggagattttcaaaggaactgaattccatg 309  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16352838 attattcgagggtagaatcgaagaaggaagaaaggggattttcagggttctgggaaccgtgaaagatggttggagattttcgaaggaactgaattccatg 16352739  T
Q  310 tttgaggattggaattcgaaagcttcagggattgagtggtttacctaggcaaagaaggtt 369  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||    
T  16352738 tttgaggattggaattcgaaagcttcagggattgagtggttcacctgggcaaagatggtt 16352679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 18851974 - 18852011
Alignment:
Q  392 gttattatttgaattggaagggaaaaattttgtttcat 429  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  18851974 gttattatttgaactggaaggggaaaattttgtttcat 18852011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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