View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19057_low_9 (Length: 240)
Name: NF19057_low_9
Description: NF19057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19057_low_9 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 44949389 - 44949165
Alignment:
| Q |
1 |
tcaacactgaagtcacaggaaaacaaatagaggagattttgcaaactttggttttagatgatgagatcatgcagatgacaagtgctggatatggggattt |
100 |
Q |
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| T |
44949389 |
tcaacactgaagtcacaggaaaacaaatagaggagattttgcaaactttggttttagatgatgagatcatgcagatgacaagtgctggatatggggattt |
44949290 |
T |
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| Q |
101 |
tgcatttattccagttggcaaaacttgttacatatgcaaaagcaagggtggagttataggggaaaagaaatctggctactttacttcctttccatgtttt |
200 |
Q |
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| T |
44949289 |
tgcatttattccagttggcaaaacttgttacatatgcaaaagcaagggtggagttataggggaaaagaaatctggctactttacttcctttccatgtttt |
44949190 |
T |
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| Q |
201 |
tcttgtgagcgaatgagcttttgtt |
225 |
Q |
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| T |
44949189 |
tcttgtgagcgaatgagcttttgtt |
44949165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 6470229 - 6470089
Alignment:
| Q |
10 |
aagtcacaggaaaacaaatagaggagattttgcaaactttggttttagatgatgagatcatgcagatgacaagtgctggatatggggattttgcatttat |
109 |
Q |
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| T |
6470229 |
aagtcacgggagaacaaatagaagagattttacaaactttggttttagatgatgagataatgcagatgacaagtactggatatggggattttgcatctat |
6470130 |
T |
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| Q |
110 |
tccagttggcaaaacttgttacatatgcaaaagcaagggtg |
150 |
Q |
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| T |
6470129 |
tcctgttggcaaaacttgttacatatgcaaaagcaagggtg |
6470089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 44943594 - 44943533
Alignment:
| Q |
7 |
ctgaagtcacaggaaaacaaatagaggagattttgcaaactttggttttagatgatgagatc |
68 |
Q |
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| T |
44943594 |
ctgaagtcacaggaaaacaaatagaggagattttgcaaactttggttttagatgatgagatc |
44943533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 419455 - 419595
Alignment:
| Q |
10 |
aagtcacaggaaaacaaatagaggagattttgcaaactttggttttagatgatgagatcatgcagatgacaagtgctggatatggggattttgcatttat |
109 |
Q |
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| T |
419455 |
aagtcacgggagaccaaatagaagagattttgcaaactttggttttagacgatgagatcatgcagatgacaagtactggatatggggattttgcatctat |
419554 |
T |
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| Q |
110 |
tccagttggcaaaacttgttacatatgcaaaagcaagggtg |
150 |
Q |
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| T |
419555 |
tcccgttggcaaaacttgttacatatgcaaaagcaagggtg |
419595 |
T |
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